G
Geoff Waldbieser
Researcher at Agricultural Research Service
Publications - 24
Citations - 1149
Geoff Waldbieser is an academic researcher from Agricultural Research Service. The author has contributed to research in topics: Catfish & Ictalurus. The author has an hindex of 18, co-authored 24 publications receiving 1028 citations.
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Journal ArticleDOI
Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research
Hisham A. Abdelrahman,Mohamed ElHady,Acacia Alcivar-Warren,Standish K. Allen,Rafet Al-Tobasei,Lisui Bao,Ben Beck,Harvey D. Blackburn,Brian G. Bosworth,John Buchanan,Jesse A. Chappell,William H. Daniels,Sheng Dong,Rex A. Dunham,Evan Durland,Ahmed Elaswad,Marta Gomez-Chiarri,Kamal Gosh,Ximing Guo,Perry B. Hackett,Terry Hanson,Dennis Hedgecock,Tiffany S. Howard,Leigh Holland,Molly Jackson,Yulin Jin,Karim Khalil,Thomas D. Kocher,Timothy D. Leeds,Ning Li,Lauren Lindsey,Shikai Liu,Zhanjiang Liu,Kyle E. Martin,Romi Novriadi,Ramjie Odin,Yniv Palti,Eric Peatman,Dina A. Proestou,Guyu Qin,Benjamin J. Reading,Caird E. Rexroad,Steven B. Roberts,Mohamed Salem,Andrew J. Severin,Huitong Shi,Craig A. Shoemaker,Sheila Stiles,Suxu Tan,Kathy F.J. Tang,Wilawan Thongda,Terrence R. Tiersch,Joseph R. Tomasso,Wendy Tri Prabowo,Roger L. Vallejo,Hein van der Steen,Khoi Vo,Geoff Waldbieser,Han-Ping Wang,Xiaozhu Wang,Jianhai Xiang,Yujia Yang,Roger Yant,Zihao Yuan,Qifan Zeng,Tao Zhou +65 more
TL;DR: A general review of the current status, challenges and future research needs of aquaculture genomics, genetics, and breeding is provided, with a focus on major Aquaculture species in the United States: catfish, rainbow trout, Atlantic salmon, tilapia, striped bass, oysters, and shrimp.
Journal ArticleDOI
Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote
Shikai Liu,Shikai Liu,Yu Zhang,Zunchun Zhou,Geoff Waldbieser,Fanyue Sun,Jianguo Lu,Jiaren Zhang,Yanliang Jiang,Hao Zhang,Xiuli Wang,K.V. Rajendran,Lester H. Khoo,Huseyin Kucuktas,Eric Peatman,Zhanjiang Liu +15 more
TL;DR: The large set of transcripts assembled in this study is the most comprehensive set of genome resources ever developed from catfish, which will provide the much needed resources for functional genome research inCatfish, serving as a reference transcriptome for genome annotation, analysis of gene duplication, gene family structures, and digital gene expression analysis.
Journal ArticleDOI
Analysis of a catfish gene resembling interleukin-8: cDNA cloning, gene structure, and expression after infection with Edwardsiella ictaluri.
Liqiao Chen,Chongbo He,Puttharat Baoprasertkul,Peng Xu,Ping Li,Jerry Serapion,Geoff Waldbieser,William R. Wolters,Zhanjiang Liu +8 more
TL;DR: Channel catfish gene resembling interleukin-8 like gene was up-regulated 3-5-fold in channel catfish and blue catfish after infection with pathogenic bacteria Edwardsiella ictaluri and RT-PCR indicated that both spliced forms were expressed.
Journal ArticleDOI
Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
Shaolin Wang,Eric Peatman,Jason Abernathy,Geoff Waldbieser,Erika Lindquist,Paul G. Richardson,Susan Lucas,Mei Wang,Ping Li,Jyothi Thimmapuram,Lei Liu,Deepika Vullaganti,Huseyin Kucuktas,Chris Murdock,Brian C. Small,Melanie Wilson,Hong Liu,Yanliang Jiang,Yoona Lee,Fei Chen,Jianguo Lu,Wenqi Wang,Peng Xu,Benjaporn Somridhivej,Puttharat Baoprasertkul,Jonas P. Quilang,Zhenxia Sha,Baolong Bao,Yaping Wang,Qun Wang,Tomokazu Takano,Samiran Nandi,Shikai Liu,Li Lian Wong,Ludmilla Kaltenboeck,Sylvie M. A. Quiniou,Eva Bengtén,Norman W. Miller,John M. Trant,Daniel S. Rokhsar,Daniel S. Rokhsar,Zhanjiang Liu +41 more
TL;DR: This project generated a large EST resource for catfish that captured the majority of the catfish transcriptome and should be valuable for identification of microsatellites, genome annotation, large-scale expression analysis, and comparative genome analysis.
Journal ArticleDOI
Channel catfish, Ictalurus punctatus, CD4-like molecules.
Eva-Stina Edholm,James L. Stafford,Sylvie M. A. Quiniou,Geoff Waldbieser,Norman W. Miller,Eva Bengtén,Melanie Wilson +6 more
TL;DR: Two CD4-like (CD4L) molecules have been identified in channel catfish, Ictalurus punctatus, and while both molecules appear to be T cell specific, their functional significance in catfish is unknown.