Showing papers by "Oregon State University published in 1992"

Climate Forcing by Anthropogenic Aerosols

Abstract: Although long considered to be of marginal importance to global climate change, tropospheric aerosol contributes substantially to radiative forcing, and anthropogenic sulfate aerosol in particular has imposed a major perturbation to this forcing. Both the direct scattering of shortwavelength solar radiation and the modification of the shortwave reflective properties of clouds by sulfate aerosol particles increase planetary albedo, thereby exerting a cooling influence on the planet. Current climate forcing due to anthropogenic sulfate is estimated to be –1 to –2 watts per square meter, globally averaged. This perturbation is comparable in magnitude to current anthropogenic greenhouse gas forcing but opposite in sign. Thus, the aerosol forcing has likely offset global greenhouse warming to a substantial degree. However, differences in geographical and seasonal distributions of these forcings preclude any simple compensation. Aerosol effects must be taken into account in evaluating anthropogenic influences on past, current, and projected future climate and in formulating policy regarding controls on emission of greenhouse gases and sulfur dioxide. Resolution of such policy issues requires integrated research on the magnitude and geographical distribution of aerosol climate forcing and on the controlling chemical and physical processes.

Students' and teachers' conceptions of the nature of science: A review of the research

Abstract: The development of adequate student conceptions of the nature of science has been a perennial objective of science instruction regardless of the currently advocated pedagogical or curricular emphases. Consequently, it has been an area of prolific research characterized by several parallel, but distinct, lines of investigation. Although research related to students' and teachers' conceptions of the nature of science has been conducted for approximately 40 years, a comprehensive review of the empirical literature (both quantitative and qualitative) has yet to be presented. The overall purpose of this review is to help clarify what has been learned and to elucidate the basic assumptions and logic which have guided earlier research efforts. Ultimately, recommendations related to both methodology and the focus of future research are offered.

Oxygen solubility in seawater : better fitting equations

Abstract: We examined uncertainties associated with the routine computation of O2 solubility (Co*) at 1 atm total pressure in pure water and seawater in equilibrium with air as a function of temperature and salinity. We propose formulae expressing C*(at STP, real gas) in cm3 dm−3 and µmol kg−1 in the range (tF ≥ t 40°C; 0 ≥ S 42‰) based on a fit to precise data selected from the literature.

Antibacterial action of chitosan

Abstract: The antibacterial action of chitosan hydroglutamate (CH), chitosan lactate (CL) and chitosan derived from fungal mycelia was examined against both gram‐negative and gram‐positive bacteria. Plate counts indicated inactivation rates of one‐ to five‐log‐cycles within one hour. Fungal chitosan had significantly less antibiotic effect than CH and CL. The antibacterial action of CH and CL was very similar and shown to be concentration dependent with 0.1 mg/mL more effective than 2.0 and 5.0 mg/mL. When CH (or CL) and polygalacturonate were added to cell suspensions, death was prevented, possibly indicating that chitosan complexed with polygalacturonate could not penetrate the cell or disrupt the membrane. Leakage of intracellular components caused by chitosan was determined by exposing lactose‐induced Escherichia coli to chitosan with assay for s‐galactosidase activity indicating that cell permeabilization occurred more extensively at the low chitosan concentrations. Microscopic examination showed that...

Formation of an Archaean continent

Abstract: About 30% of the Earth is covered by continents, but only about 10 small kernels of these continentsae—known as Archaean cratonsae—are continental fragments formed before 2.5 Gyr ago. The Kaapvaal craton of South Africa, which formed and stabilized between 3.7 and 2.7 Gyr ago, is one of the oldest reasonably sized examples of these continental fragments. It consists of a mosaic of subdomains that have been welded together by processes similar to those of modern-day plate tectonics. The earliest subdomains may have owed their origin to the onset of efficient recycling from the Earth's hydrosphere into the mantle.

Inverse Methods in Physical Oceanography

Abstract: Preface 1. Finite-dimensional inverse theory 2. The smoothing of observations 3. Data assimilation 4. The spatial structure of the Kalman filter 5. Generalized inverses of dynamical models 6. Antenna analysis 7. Nonlinear quasi-geostrophic models 8. Open-ocean modeling: quasi-geostrophy 9. Primitive-equation models 10. Outstanding problems Bibliography Subject index.

Chemistry and biology of boron.

Abstract: Boron is an essential nutrient for certain organisms, notably vascular plants and diatoms. Cyanobacteria require boron for formation of nitrogen-fixing heterocysts and boron may be beneficial to animals. Boron deficiency in plants produces manifold symptoms: many functions have been postulated. Deficiency symptoms first appear at growing points, within hours in root tips and within minutes or seconds in pollen tube tips, and are characterized by cell wall abnormalities. Boron-deficient tissues are brittle or fragile, while plants grown on high boron levels may have unusually flexible or resilient tissues. Borate forms cyclic diesters with appropriate diols or polyols. The most stable are formed with cis-diols on a furanoid ring. Two compounds have this structure physiologically: ribose in ribonucleotides and RNA, and apiose in the plant cell wall. Germanium can substitute for boron in carrot cell cultures. Both boron and germanium are localized primarily in the cell wall. We postulate that borate-apiofuranose ester cross-links are the auxin-sensitive acid-growth link in vascular plants, that the cyanobacterial heterocyst envelope depends on borate cross-linking of mannopyranose and/or galactopyranose residues in a polysaccharide-lipid environment, and that boron in diatoms forms ester cross-links in the polysaccharide cell wall matrix rather than boron-silicon interactions. Complexing of ribonucleotides is probably a factor in boron toxicity.

Dynamics of the atmosphere of Mars

Abstract: The current understanding of the Martian atmospheric circulation and boundary layer is described The available meteorological data and the first-order constraints that can be derived from them are reviewed Pertinent aspects of atmospheric radiation on Mars are briefly presented; their main features are the short radiative time constraints on Mars, as compared to earth, and the important role of suspended dust in providing a potent thermal drive for the atmosphere The current understanding of the Martian atmospheric circulation and its various components - the zonal-mean, zonal, and meridional flows, stationary and traveling planetary waves, atmospheric thermal tides, topographic wind systems, free modes, and gravity waves - is examined Present-day knowledge of the PBL on Mars is reviewed, with particular attention given to the Viking Orbiter and Lander observations relating to the winds required for raising dust from the surface The theory of the origin and decay of great dust storms on Mars is reviewed

Smoke and fire characteristics for cerrado and deforestation burns in Brazil: BASE-B experiment

Abstract: Five test fires were performed during August and September 1990 in the cerrado (savannalike region) in central Brazil (three fires) and tropical moist forest (two fires) in the eastern Amazon. This paper details the gases released, the ratios of the gases to each other and to particulate matter, fuel loads, and the fraction consumed (combustion factors), and the fire behavior associated with biomass consumption. Models are presented for evaluating emission factors for CH4, CO2, CO, H2, and particles less than 2.5 micron diam (PM2.5) as a function of combustion efficiency. The ratio of carbon released as CO2 (combustion efficiency) for the cerrado fires averaged 0.94 and for the deforestation fires it decreased from 0.88 for the flaming phase to less than 0.80 during the smoldering phase of combustion. For tropical ecosystems, emissions of most products of incomplete combustion are projected to be lower than previous estimates for savanna ecosystems and somewhat higher for fires used for deforestation purposes.

Extensive variation in evolutionary rate of rbcL gene sequences among seed plants.

Abstract: Extensive variation in synonymous and nonsynonymous rates of substitution was observed among 50 sequences of the gene coding for the large subunit of ribulose-1,5-bisphosphate carboxylase (rbcL) representing bryophyte, conifer, dicot, and monocot taxa. Relative rate tests revealed rate differences of up to 138% for nonsynonymous substitutions and up to 85% for synonymous ones. Within angiosperms, the annual forms evolved more rapidly, on average, than perennial forms. This rate heterogeneity was more extensive at nonsynonymous sites than synonymous ones, and it resulted primarily from a recent acceleration of substitution rate in many groups of angiosperms.

Incidence and Causes of Physical Failure of Artificial Habitat Structures in Streams of Western Oregon and Washington

Abstract: In recent years an increasing share of fishery management resources has been committed to alteration offish habitat with artificial stream structures. We evaluated rates and causes of physical impairment or failure for 161 fish habitat structures in 15 streams in southwest Oregon and southwest Washington, following a flood of a magnitude that recurs every 2–10 years. The incidence of functional impairment and outright failure varied widely among streams; the median failure rate was 18.5% and the median damage rate (impairment plus failure) was 60%. Modes of failure were diverse and bore no simple relationship to structure design. Damage was frequent in low-gradient stream segments and widespread in streams with signs of recent watershed disturbance, high sediment loads, and unstable channels. Comparison of estimated 5–10-year damage rates from 46 projects throughout western Oregon and southwest Washington showed high but variable rates (median, 14%; range, 0–100%) in regions where peak discharge ...

Influence of Habitat Complexity on Resistance to Flooding and Resilience of Stream Fish Assemblages

Abstract: The structure of fish assemblages in five reaches of a high desert stream in north-central Oregon was determined by snorkeling before and after a summer flash flood and two spring floods. One reach in each of two other streams that were unaffected by the first flood was used as a reference system. Stream reaches varied in habitat complexity as measured by hydraulic retention. Following the floods, hydraulically complex stream reaches lost proportionately fewer fish, had generally higher fish diversities, and had higher fish assemblage similarity than hydraulically simple stream reaches. Fish assemblages were resilient, and certain species such as speckled dace Rhinichthys osculus were exceptionally good at recolonizing disturbed habitats. Successful recruitment of different fish species depended, in part, on flood timing. Young of the year of species that spawn in early spring (e.g., rainbow trout Oncorhynchus mykiss) were more negatively affected by early spring floods than summer floods. Specie...

Piscirickettsia salmonis gen. nov., sp. nov., the causative agent of an epizootic disease in salmonid fishes.

Abstract: A novel intracellular pathogen morphologically similar to the ehrlichiae has been isolated in cell culture and identified as the cause of an epizootic disease of salmonid fish. Like the ehrlichiae, the salmonid pathogen, designated strain LF-89, replicates within membrane-bound cytoplasmic vacuoles in host cells. This agent is the first with characteristics of this type to be isolated from a fish. Analysis of the LF-89 16S rRNA indicated that, unlike the ehrlichiae, LF-89 is a gamma proteobacterium distantly related to Coxiella burnetii and perhaps Wolbachia persica. A new genus and species (Piscirickettsia salmonis gen. nov., sp. nov.) are proposed for this organism, with ATCC(R) VR 1361 as the type strain.

Environment affects amino acid preference for secondary structure.

Abstract: Three equivocal amino acid sequences were synthesized that are predicted to be alpha-helical from amino acid preference but are found to be primarily beta-strand from x-ray diffraction of their respective proteins. In some solvent systems we recover the alpha-helical structure predicted by amino acid preference, whereas in other systems we mimic the interior of the protein and produce a beta-strand. These results are experimental proof that the environment is important in determining the secondary structure formed by an amino acid sequence; therefore schemes that predict secondary structure from amino acid sequence alone can never be totally successful.

Effect of protistan grazing on the frequency of dividing cells in bacterioplankton assemblages.

Abstract: Grazing by phagotrophic flagellates and ciliates is a major source of mortality for bacterioplankton in both marine and freshwater systems. Recent studies have demonstrated a positive relationship between clearance rate and prey size for bacterivorous protists. We tested the idea that, by selectively grazing the larger (more actively growing or dividing) cells in a bacterial assemblage, protists control bacterial standing stock abundances by directly cropping bacterial production. Samples of estuarine water were passed through 0.8-μm-pore-size filters (bacteria only) or 20-μm-mesh screens (bacteria and bacterivorous protists) and placed in dialysis tubing suspended in 7 liters of unfiltered water. Changes in total bacterial biovolume per milliliter (bacterial biomass), frequency of dividing cells (FDC), and average per cell biovolume were followed over a period of 24 h. In three experiments, the FDC increased more rapidly and attained higher values in water passed through 0.8-μm-pore-size filters (average, 5.1 to 8.9%; maximum, 15.5%) compared with FDC values in water passed through 20-μm-mesh screens (average, 2.7 to 5.3%; maximum, 6.7%). Increases in bacterial biomass per milliliter lagged behind increases in FDC by about 4 to 6 h. Grazed bacterial assemblages were characterized by lower total biomasses and smaller average cell sizes compared with those of cells in nongrazed assemblages. We conclude that bacterivorous protists control bacterial standing stock abundances partly by preferentially removing dividing cells. Selective grazing of the more actively growing cells may also explain, in part, the ability of slow-growing cells to persist in bacterioplankton assemblages.

Pathogen-derived resistance to a potyvirus: immune and resistant phenotypes in transgenic tobacco expressing altered forms of a potyvirus coat protein nucleotide sequence.

Abstract: Transgenic Nicotiana tabacum 'Burley 49' plants containing one of six different forms of the tobacco etch virus (TEV) coat protein (CP) nucleotide sequence have been generated. In whole plant studies, R1 and R2 progeny were inoculated mechanically with TEV, and the appearance and severity of symptoms were recorded. Symptom phenotype was altered, ranging from near wild type susceptibility to apparent immunity. Protoplasts derived from wild type and transgenic Burley 49 plant lines were transfected with TEV RNA. Protoplasts from transgenic plants expressing full-length or truncated forms of TEV CP supported virus replication. Protoplasts from certain transgenic plants, producing plus- or minus-sense CP transcripts but no CP, did not support virus replication at wild type levels. A model is proposed to account for these observations.

Parenting, peers, and the stability of antisocial behavior in preadolescent boys.

Abstract: This study examined the linkages between parental discipline practices, peer relationships, and antisocial behavior in a 2-year longitudinal study (N=206) of preadolescent boys (aged 9-10 at first assessment). Structural equation models were used to estimate the stability of parenting, peer relations, and antisocial constructs, and their effects on each other

Precipitation Estimation in Mountainous Terrain Using Multivariate Geostatistics. Part II: Isohyetal Maps

Abstract: Values of average annual precipitation (AAP) may be important for hydrologic characterization of a potential high-level nuclear-waste repository site at Yucca Mountain, Nevada. Reliable measurements of AAP are sparse in the vicinity of Yucca Mountain, and estimates of AAP were needed for an isohyetal mapping over a 2600-square-mile watershed containing Yucca Mountain. Estimates were obtained with a multivariate geostatistical model developed using AAP and elevation data from a network of 42 precipitation stations in southern Nevada and southeastern California. An additional 1531 elevations were obtained to improve estimation accuracy. Isohyets representing estimates obtained using univariate geostatistics (kriging) defined a smooth and continuous surface. Isohyets representing estimates obtained using multivariate geostatistics (cokriging) defined an irregular surface that more accurately represented expected local orographic influences on AAP. Cokriging results included a maximum estimate within...

Oceanic crustal thickness versus spreading rate

Abstract: A compilation of oceanic crustal thickness from seismic observations collected over the past two decades shows that the average crustal thickness, away from plateaus, is 6 km; no systematic increase of crustal thickness with spreading rate is observed. Instead, the data show large variations in crustal thickness at slow spreading ridges (3 – 8 km for half rates 30 mm/yr). The large variations at slow ridges and small variations at fast ridges are consistent with the results inferred from recent gravity studies of mid-ocean ridges. Both data sets support the speculation of a transition from a 3-D structure of crustal accretion at slow ridges to a 2-D accretion pattern at fast ridges.

Experimentally determined mineral-melt partition coefficients for Sc, Y and REE for olivine, orthopyroxene, pigeonite, magnetite and ilmenite

Abstract: Our current lack of understanding of the partitioning behavior of Sc, Y and the REE (rare-earth elements) can be attributed directly to the lack of a sufficiently large or chemically diverse experimental data set. To address this problem, we conducted a series of experiments using several different natural composition lavas, doped with the elements of interest, as starting compositions. Microprobe analyses of orthopyroxene, pigeonite, olivine, magnetite, ilmenite and co-existing glasses in the experimental charges were used to calculate expressions that describe REE partitioning as a function of a variety of system parameters. Using expressions that represent mineral-melt reactions (versus element ratio distribution coefficients) it is possible to calculate terms that express low-Ca pyroxene-melt partitioning behavior and are independent of both pyroxene and melt composition. Compositional variations suggest that Sc substitution in olivine involves either a paired substitution with Al or, more commonly, with vacancies. The partitioning of Sc is dependent both on melt composition and temperature. Our experimentally determined olivine-melt REE Ds (partition coefficients) are similar to, but slightly higher than those reported by McKay (1986) and support their conclusions that olivines are strongly LREE depleted. Y and REE mineral/melt partition coefficients for magnetite range from 0.003 for La to 0.02 for Lu. Ilmenite partition coefficients range from 0.007 for La to 0.029 for Lu. These experimental values are two orders of magnitude lower than many of the published values determined by phenocryst/matrix separation techniques.

The Autographa californica baculovirus genome: evidence for multiple replication origins.

Abstract: The Autographa californica multinucleocapsid nuclear polyhedrosis virus (AcMNPV), which is used for the overexpression of eukaryotic genes and is being engineered for possible use as a viral insecticide, has a circular, supercoiled genome of approximately 128 kilobases. Despite its widespread use, little is known about the mechanism by which AcMNPV replicates. Evidence is presented in this report that AcMNPV origins of DNA replication are repeated sequences each containing several closely related imperfect palindromes that are present in six regions distributed around the genome. Although AcMNPV infection-dependent plasmid replication was initiated by a single complete palindrome, the amount of replication was substantially increased in plasmids containing six or eight palindromes.