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Open AccessJournal ArticleDOI

A cytotoxic early gene of Bacillus subtilis bacteriophage SPO1.

Ping Wei, +1 more
- 01 Dec 1993 - 
- Vol. 175, Iss: 24, pp 7887-7900
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TLDR
It is suggested that e3 is one of several genes involved in host Shutoff, that its function is dispensable both for host shutoff and for phage multiplication, and that its shutoff function is not entirely specific to host activities.
Abstract
Some of the early genes of Bacillus subtilis bacteriophage SPO1 were hypothesized to function in the shutoff of host biosyntheses. Two of these genes, e3 and e22, were cloned and sequenced. E22 showed no similarity to any known protein, while E3, a highly acidic protein, showed significant similarity only to other similarly acidic proteins. Each gene was immediately downstream of a very active early promoter. Each was expressed actively during the first few minutes of infection and was then rapidly shut off and its RNA rapidly degraded. An e3 nonsense mutation severely retarded the degradation of e3 RNA. Expression of a plasmid-borne e3 gene, in either B. subtilis or Escherichia coli, resulted in the inhibition of host DNA, RNA, and protein syntheses and prevented colony formation. However, the e3 nonsense mutation caused no measurable decrease in either burst size or host shutoff during infection and, in fact, caused an increased burst size at high multiplicities of infection. We suggest that e3 is one of several genes involved in host shutoff, that its function is dispensable both for host shutoff and for phage multiplication, and that its shutoff function is not entirely specific to host activities.

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Citations
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Journal ArticleDOI

The Genome of Bacillus Subtilis Bacteriophage SPO1.

TL;DR: A pattern similar to what has been noted in phage T4 and its relatives is noted, in which there is minimal successful horizontal exchange of genes among a "core" set of genes that includes most of the virion structural genes and some genes of DNA metabolism, but there is extensive horizontal transfer of genes over the remainder of the genome.
Book ChapterDOI

Genomics of staphylococcal Twort-like phages--potential therapeutics of the post-antibiotic era.

TL;DR: Polyvalent bacteriophages of the genus Twort-like that infect clinically relevant Staphylococcus strains may be among the most promising phages with potential therapeutic applications and can be predicted based on their homology to prototypical genes of model spounavirus SPO1.
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Scrutinizing virus genome termini by high-throughput sequencing.

TL;DR: This study sequenced one iridovirus genome and twenty phage genomes and confirmed for the first time that the high frequency sequences found in the NGS reads are indeed the terminal sequences of viral genomes, and established a criterion to distinguish the type of termini and the viral packaging mode.
Journal ArticleDOI

Genes and Regulatory Sites of the ``Host-Takeover Module'' in the Terminal Redundancy of Bacillus subtilis Bacteriophage SPO1

TL;DR: The nucleotide sequence of this 11.5-kb "host-takeover module" appears to be designed for particularly efficient expression, and has additional conserved features which are not characteristic of their host counterparts and which may be important for competition with host genes for the cellular biosynthetic machinery.
Journal ArticleDOI

Comparison of Staphylococcus Phage K with Close Phage Relatives Commonly Employed in Phage Therapeutics

TL;DR: This is the first comparative study of therapeutic staphylococcal phages within the recently described genus Kayvirus and two other K-like phages against 23 isolates, including 21 methicillin-resistant S. aureus representative sequence types representing the Irish National MRSA Reference Laboratory collection.
References
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Book

Molecular Cloning: A Laboratory Manual

TL;DR: Molecular Cloning has served as the foundation of technical expertise in labs worldwide for 30 years as mentioned in this paper and has been so popular, or so influential, that no other manual has been more widely used and influential.
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Basic Local Alignment Search Tool

TL;DR: A new approach to rapid sequence comparison, basic local alignment search tool (BLAST), directly approximates alignments that optimize a measure of local similarity, the maximal segment pair (MSP) score.
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Rapid and efficient site-specific mutagenesis without phenotypic selection.

TL;DR: The high efficiency, approximately equal to 10-fold greater than that observed using current methods without enrichment procedures, is obtained by using a DNA template containing several uracil residues in place of thymine, which is applied to mutations introduced via both oligonucleotides and error-prone polymerization.
Book ChapterDOI

Production of Single-Stranded Plasmid DNA

TL;DR: In the chapter, the IG, which has the potential to form five hairpin structures, is represented schematically and important regions designated and the origin of replication of the (+) strand is stated most important to the functioning of M 13KO7.
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