Journal ArticleDOI
A molecular phylogeny of the bladed Bangiales (Rhodophyta) in China provides insights into biodiversity and biogeography of the genus Pyropia
Yang Li'en,Wei Zhou,Hu Chuanming,Deng Yinyin,Guang-Ping Xu,Tao Zhang,Stephen J. Russell,Jianyi Zhu,Qin-Qin Lu,Juliet Brodie +9 more
TLDR
A transoceanic and antitropical pattern of distribution was found forPyropia at both the subgeneric and species level, indicating that the Northwest Pacific might act as a centre of origin for modern distribution of Pyropia since the early Cenozoic.About:
This article is published in Molecular Phylogenetics and Evolution.The article was published on 2018-03-01. It has received 26 citations till now. The article focuses on the topics: Species complex & Molecular phylogenetics.read more
Citations
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Journal ArticleDOI
Redefining Pyropia (Bangiales, Rhodophyta): Four New Genera, Resurrection of Porphyrella and Description of Calidia pseudolobata sp. nov. From China
TL;DR: The genus Pyropia, resurrected Porphyrella is redefined, and four new genera are proposed: Calidia, Neoporphyra, Neopyropia and Uedaea are proposed based on both morphological and molecular data.
Journal ArticleDOI
The specific DNA barcodes based on chloroplast genes for species identification of Orchidaceae plants.
Huili Li,Wenjun Xiao,Tie Tong,Yongliang Li,Meng Zhang,Xiaoxia Lin,Xiaoxiao Zou,Qun Wu,Xinhong Guo +8 more
TL;DR: In this paper, the DNA barcoding of four chloroplast genes (matK, rbcL, ndhF and ycf1) were used to provide theoretical basis for species identification, germplasm conservation and innovative utilization of orchids.
Journal ArticleDOI
Extensive cryptic diversity in the widely distributed Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta): Molecular species delimitation and morphometric analyses.
TL;DR: This study indicates that a significant level of undiscovered cryptic diversity is likely to be found in algal turfs, a type of seaweed community formed by small entangled species.
Journal ArticleDOI
DNA barcoding reveals cryptic diversity of economic red algae, Pyropia (Bangiales, Rhodophyta): description of novel species from Korea
Young Ho Koh,Myung Sook Kim +1 more
TL;DR: This study explored the species diversity of the genus Pyropia in Korea based on the molecular analyses and morphological observations, and confirmed seven species including two new ones, and found cryptic species diversity in areas that are remote or not easily approachable such as Ulleung Island in the middle of east sea far from mainland or underwater habitat deeper than 10 m of Udo, Jeju.
Journal ArticleDOI
Genetic and morphological differentiation of Porphyra and Pyropia species (Bangiales, Rhodophyta) coexisting in a rocky intertidal in Central Chile.
Andrés Meynard,Javier Zapata,Nicolás Salas,Claudia Betancourtt,Gabriel Pérez-Lara,Francisco Castañeda,María Eliana Ramírez,Cristian Bulboa Contador,Marie-Laure Guillemin,Marie-Laure Guillemin,Loretto Contreras-Porcia,Loretto Contreras-Porcia +11 more
TL;DR: It is concluded that morphology is not sufficient to differentiate bladed Bangiales, and three of four species that predominate in Maitencillo have been described and named.
References
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Basic Local Alignment Search Tool
TL;DR: A new approach to rapid sequence comparison, basic local alignment search tool (BLAST), directly approximates alignments that optimize a measure of local similarity, the maximal segment pair (MSP) score.
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MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
Koichiro Tamura,Daniel S. Peterson,Nicholas Peterson,Glen Stecher,Masatoshi Nei,Sudhir Kumar +5 more
TL;DR: The newest addition in MEGA5 is a collection of maximum likelihood (ML) analyses for inferring evolutionary trees, selecting best-fit substitution models, inferring ancestral states and sequences, and estimating evolutionary rates site-by-site.
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BEAST: Bayesian evolutionary analysis by sampling trees
TL;DR: BEAST is a fast, flexible software architecture for Bayesian analysis of molecular sequences related by an evolutionary tree that provides models for DNA and protein sequence evolution, highly parametric coalescent analysis, relaxed clock phylogenetics, non-contemporaneous sequence data, statistical alignment and a wide range of options for prior distributions.
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Bayesian Phylogenetics with BEAUti and the BEAST 1.7
TL;DR: The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package version 1.7 is presented, which implements a family of Markov chain Monte Carlo algorithms for Bayesian phylogenetic inference, divergence time dating, coalescent analysis, phylogeography and related molecular evolutionary analyses.