Distribution of non-aureus staphylococci species in udder quarters with low and high somatic cell count, and clinical mastitis.
Larissa Anuska Zeni Condas,Jeroen De Buck,Diego B. Nobrega,Domonique A. Carson,Jean-Philippe Roy,Greg Keefe,T J DeVries,John R. Middleton,Simon Dufour,Herman W. Barkema +9 more
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The aim of this study was to determine the SCC of quarters infected by individual NAS species compared with NAS as a group, culture-negative, and major pathogen-infected quarters and the distribution of NAS species isolated from quarters with low SCC and high SCC, and clinical mastitis.About:
This article is published in Journal of Dairy Science.The article was published on 2017-07-01 and is currently open access. It has received 57 citations till now. The article focuses on the topics: Staphylococcus chromogenes & Staphylococcus agnetis.read more
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Invited review: Microbiota of the bovine udder: Contributing factors and potential implications for udder health and mastitis susceptibility
Hooman Derakhshani,Kelsey Fehr,Shadi Sepehri,David Francoz,Jeroen De Buck,Herman W. Barkema,Jan C. Plaizier,Ehsan Khafipour +7 more
TL;DR: Current understanding of the microbiota within various niches of the udder is summarized and the need to view the microbiota of the teat apex, teat canal, and mammary secretions as interconnected nichels of a highly dynamic microbial ecosystem is highlighted.
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Association of bovine major histocompatibility complex (BoLA) gene polymorphism with colostrum and milk microbiota of dairy cows during the first week of lactation
TL;DR: Determining whether BoLA-mediated shifts in the composition of colostrum microbiota are regulated directly by immune system or indirectly by microbiota-derived colonization resistant can have important implications for future development of preventive/therapeutic strategies for controlling mastitis.
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Host defense cathelicidins in cattle: types, production, bioactive functions and potential therapeutic and diagnostic applications.
TL;DR: Comparison of the structural, antimicrobial, cytotoxic and mechanistic properties of bovine cathelicidins advances the knowledge needed for the development of these peptides as potential identifiers of infectious diseases and as novel therapeutic alternatives to antibiotics.
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Molecular epidemiology and distribution of antimicrobial resistance genes of Staphylococcus species isolated from Chinese dairy cows with clinical mastitis
Yue Qu,Huanan Zhao,Diego B. Nobrega,Eduardo R. Cobo,Bo Han,Zhonghua Zhao,Shumei Li,Mengyue Li,Herman W. Barkema,Jian Gao +9 more
TL;DR: High prevalence of ARG, especially in NAS, highlighted the risk of selection of multi-drug resistant staphylococci with potential as a reservoir of ARGs in these isolates.
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Non-aureus Staphylococci and Bovine Udder Health: Current Understanding and Knowledge Gaps.
Jeroen De Buck,Vivian Ha,Sohail Naushad,Diego B. Nobrega,Christopher Luby,John R. Middleton,Sarne De Vliegher,Herman W. Barkema +7 more
TL;DR: The role and impact of non-aureus staphylococci (NAS) in udder health are not entirely understood as mentioned in this paper, and the role of NAS in bovine mastitis is not fully understood.
References
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Controlling the false discovery rate: a practical and powerful approach to multiple testing
Yoav Benjamini,Yosef Hochberg +1 more
TL;DR: In this paper, a different approach to problems of multiple significance testing is presented, which calls for controlling the expected proportion of falsely rejected hypotheses -the false discovery rate, which is equivalent to the FWER when all hypotheses are true but is smaller otherwise.
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The R Book
TL;DR: The R Book is the first comprehensive reference manual for the R language, including practical guidance and full coverage of the graphics facilities, and introduces the advantages of the R environment, detailing its applications in a wide range of disciplines.
The R book
TL;DR: The R Book is the first comprehensive reference manual for the R language, including practical guidance and full coverage of the graphics facilities, and introduces the advantages of the R environment, detailing its applications in a wide range of disciplines.
JAGS: A program for analysis of Bayesian graphical models using Gibbs sampling
TL;DR: JAGS is a program for Bayesian Graphical modelling which aims for compatibility with Classic BUGS and could eventually be developed as an R package.
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Veterinary Epidemiologic Research
TL;DR: Some of the lines in some of the Figures are printed very faintly (and in some cases are almost invisible), which was a surprise as the Figures had all printed perfectly well when the galley proofs were examined.