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Do ecological communities disperse across biogeographic barriers as a unit

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TLDR
It is demonstrated that ecological relationships may be an important predictor of codiversification, and supports recent suggestions that organismal trait data should be prominently featured in comparative phylogeographic investigations.
Abstract
Biogeographic barriers have long been implicated as drivers of biological diversification, but how these barriers influence co-occurring taxa can vary depending on factors intrinsic to the organism and in their relationships with other species. Due to the interdependence among taxa, ecological communities present a compelling opportunity to explore how interactions among species may lead to a shared response to historical events. Here we collect single nucleotide polymorphism data from five commensal arthropods associated with the Sarracenia alata carnivorous pitcher plant, and test for codiversification across the Mississippi River, a major biogeographic barrier in the southeastern United States. Population genetic structure in three of the ecologically dependent arthropods mirrors that of the host pitcher plant, with divergence time estimates suggesting two of the species (the pitcher plant moth Exyra semicrocea and a flesh fly Sarcophaga sarraceniae) dispersed synchronously across this barrier along with the pitcher plant. Patterns in population size and genetic diversity suggest the plant and ecologically dependent arthropods dispersed from east to west across the Mississippi River. In contrast, species less dependent on the plant ecologically show discordant phylogeographic patterns. This study demonstrates that ecological relationships may be an important predictor of codiversification, and supports recent suggestions that organismal trait data should be prominently featured in comparative phylogeographic investigations.

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Process-based species delimitation leads to identification of more biologically relevant species.

TL;DR: By considering process, the R‐package delimitR is introduced and applied to identify species boundaries in the reticulate taildropper slug (Prophysaon andersoni), and it is suggested that secondary contact is an important mechanism driving speciation in this system.
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Biogeography of mutualistic fungi cultivated by leafcutter ants

TL;DR: The cultivar diversity becomes compatible with a recently proposed hypothesis of a Central American origin by postulating that leafcutter ants acquired novel cultivars many times from other nonleafcutter fungus‐growing ants during their migrations from Central America across South America.
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Whole-genome data reveal the complex history of a diverse ecological community.

TL;DR: De novo genomic data and likelihood-based approaches are used to infer the assembly history of a multispecies community of Western Palearctic insect herbivores and parasitoid natural enemies—the two trophic groups that together comprise 50% of all animal species.
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An integrated model of population genetics and community ecology

TL;DR: In this article, M.J.H. et al. used the City University of New York High Performance Computing Center (CUNY HSCC) to develop a system to detect the presence of a fungus.
References
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Journal Article

R: A language and environment for statistical computing.

R Core Team
- 01 Jan 2014 - 
TL;DR: Copyright (©) 1999–2012 R Foundation for Statistical Computing; permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and permission notice are preserved on all copies.
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A new look at the statistical model identification

TL;DR: In this article, a new estimate minimum information theoretical criterion estimate (MAICE) is introduced for the purpose of statistical identification, which is free from the ambiguities inherent in the application of conventional hypothesis testing procedure.
Journal ArticleDOI

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

TL;DR: The main innovations of the new version of the Arlequin program include enhanced outputs in XML format, the possibility to embed graphics displaying computation results directly into output files, and the implementation of a new method to detect loci under selection from genome scans.
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Inference of population structure using multilocus genotype data: dominant markers and null alleles

TL;DR: A simple approach for accounting for genotypic ambiguity in studies of population structure and apply it to AFLP data from whitefish is presented.
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