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Evidence for hybridization and introgression within a species-rich oak (Quercus spp.) community.

TLDR
The data indicate that natural hybridization has occurred at relatively low rates, and a partial congruence between phenotypically and genetically intermediate individuals was found, suggesting that intermediate appearance does not necessarily mean hybridization.
Abstract
Analysis of interspecific gene flow is crucial for the understanding of speciation processes and maintenance of species integrity. Oaks (genus Quercus, Fagaceae) are among the model species for the study of hybridization. Natural co-occurrence of four closely related oak species is a very rare case in the temperate forests of Europe. We used both morphological characters and genetic markers to characterize hybridization in a natural community situated in west-central Romania and which consists of Quercus robur, Q. petraea, Q. pubescen s, and Q. frainetto, respectively. On the basis of pubescence and leaf morphological characters ~94% of the sampled individuals were assigned to pure species. Only 16 (~6%) individual trees exhibited intermediate morphologies or a combination of characters of different species. Four chloroplast DNA haplotypes were identified in the study area. The distribution of haplotypes within the white oak complex showed substantial differences among species. However, the most common haplotypes were present in all four species. Furthermore, based on a set of 7 isozyme and 6 microsatellite markers and using a Bayesian admixture analysis without any a priori information on morphology we found that four genetic clusters best fit the data. There was a very good correspondence of each species with one of the inferred genetic clusters. The estimated introgression level varied markedly between pairs of species ranging from 1.7% between Q. robur and Q. frainetto to 16.2% between Q. pubescens and Q. frainetto. Only nine individuals (3.4%) appeared to be first-generation hybrids. Our data indicate that natural hybridization has occurred at relatively low rates. The different levels of gene flow among species might be explained by differences in flowering time and spatial position within the stand. In addition, a partial congruence between phenotypically and genetically intermediate individuals was found, suggesting that intermediate appearance does not necessarily mean hybridization. However, it appears that natural hybridization did not seriously affect the species identity in this area of sympatry.

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Journal ArticleDOI

From forest to field: Perennial fruit crop domestication

TL;DR: Long-lived perennials have lengthy juvenile phases, extensive outcrossing, widespread hybridization, and limited population structure, which contribute to mild domestication bottlenecks in perennial fruit crops.
Journal ArticleDOI

Species relative abundance and direction of introgression in oaks.

TL;DR: In this article, the impact of species relative abundance on hybridization dynamics among four species from the European white oak species complex was assessed, showing that hybridisation is a common phenomenon that plays a significant role in evolution.
Journal ArticleDOI

Comparative Analysis of the Complete Chloroplast Genomes of Five Quercus Species

TL;DR: The phylogenetic relationships of the Quercus species inferred from the chloroplast genomes obtained moderate-to-high support, indicating thatchloroplast genome data may be useful in resolving relationships in this genus.
Journal ArticleDOI

Phylogeny and biogeography of the American live oaks (Quercus subsection Virentes): a genomic and population genetics approach.

TL;DR: A fossil‐calibrated phylogeny of Virentes was generated using RADseq data to estimate divergence times and used nuclear microsatellites, chloroplast sequences and an intron region of nitrate reductase to examine genetic diversity within species, rates of gene flow among species and ancestral population size of disjunct sister species.
Journal ArticleDOI

Detection of hybrids in nature: application to oaks ( Quercus suber and Q. ilex )

TL;DR: This work shows that the combined application of the two complementary Bayesian approaches and their systematic validation with simulations, fit for the case at hand, helps gain resolution in the identification of admixed individuals.
References
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Journal ArticleDOI

Inference of population structure using multilocus genotype data

TL;DR: Pritch et al. as discussed by the authors proposed a model-based clustering method for using multilocus genotype data to infer population structure and assign individuals to populations, which can be applied to most of the commonly used genetic markers, provided that they are not closely linked.
Journal ArticleDOI

genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

TL;DR: Genalex is a user-friendly cross-platform package that runs within Microsoft Excel, enabling population genetic analyses of codominant, haploid and binary data.
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Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies

TL;DR: Extensions to the method of Pritchard et al. for inferring population structure from multilocus genotype data are described and methods that allow for linkage between loci are developed, which allows identification of subtle population subdivisions that were not detectable using the existing method.
Journal ArticleDOI

GENECLASS2: A Software for Genetic Assignment and First-Generation Migrant Detection

TL;DR: GENECLASS2 is a software that computes various genetic assignment criteria to assign or exclude reference populations as the origin of diploid or haploid individuals, as well as of groups of individuals, on the basis of multilocus genotype data, for the specific task of first-generation migrant detection.
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