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Journal ArticleDOI

Flexible Droplet Routing in Active Matrix–Based Digital Microfluidic Biochips

TLDR
A negotiation-guided flow based on routing of subdroplets that obviates the explicit need for deciding when the droplets are to be manipulated, yet fully utilizing the power of droplet reshaping, splitting, and merging them to facilitate their journey is proposed.
Abstract
The active matrix (AM)-based architecture offers many advantages over conventional digital electrowetting-on-dielectric (EWOD) microfluidic biochips, such as the capability of handling variable-size droplets, more flexible droplet movement, and precise control over droplet navigation. However, a major challenge in choosing the routing paths is to decide when the droplets are to be reshaped depending on the congestion of the intended path, or split- and route sub droplets,and merging them at their respective destinations. As the number of microelectrodes in AM-EWOD chips is large, the path selection problem becomes further complicated. In this article, we propose a negotiation-guided flow based on routing of subdroplets that obviates the explicit need for deciding when the droplets are to be manipulated, yet fully utilizing the power of droplet reshaping, splitting, and merging them to facilitate their journey. The proposed algorithm reduces routing cost and provides more freedom in deadlock avoidance in the presence of multiple routing tasks by assigning certain congestion penalty for sibling subdroplets and fluidic penalty for heterogeneous droplets. Compared to existing techniques, it reduces latest arrival time by an average of 29% for several benchmark and random test suites. Furthermore, our method is observed to provide 100% routability of nets for all test cases, whereas existing and baseline routers fail to produce feasible solutions in many instances. We also propose a reliable mode droplet routing strategy where the number of unreliable splitting operations can be reduced by paying a small penalty on latest arrival time.

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Citations
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Journal ArticleDOI

Micro-Electrode-Dot-Array Digital Microfluidic Biochips: Technology, Design Automation, and Test Techniques

TL;DR: Recent design tools for high-level synthesis and optimization of map bioassay protocols on a MEDA biochip are described, with the help of these tools, biochip users can concentrate on the development of nanoscale bioassays, leaving details of chip optimization and implementation to software tools.
Journal ArticleDOI

Pin Addressing Method Based on an SVM With a Reliability Constraint in Digital Microfluidic Biochips

TL;DR: A pin addressing method based on a support vector machine (SVM) with the reliability constraint algorithm, which can fully consider the electrode addressing method and the reliability of the chip together is proposed.
Proceedings ArticleDOI

Factorization based dilution of biochemical fluids with micro-electrode-dot-array biochips

TL;DR: Simulation results reveal that over a large number of test-cases with the mixing volume constraint in the range of 4--10 units, FacDA requires around 38% fewer mixing steps, 52% less sample units, and generates approximately 23% less wastage, all on average, compared to two prior dilution algorithms used for MEDA chips.
Journal ArticleDOI

A Routing-Based Repair Method for Digital Microfluidic Biochips Based on an Improved Dijkstra and Improved Particle Swarm Optimization Algorithm.

TL;DR: The routing problem is identified as a dynamic path-planning problem and mixed path design problem under certain constraints, and an improved Dijkstra and improved particle swarm optimization (ID-IPSO) algorithm is proposed, which can accommodate more faulty electrodes for the same fault repair rate.
Journal ArticleDOI

A High-performance Homogeneous Droplet Routing Technique for MEDA-based Biochips

TL;DR: A high-performance droplet routing technique for MEDA-based digital microfluidic biochips with high degree of robustness and a priority-based routing strategy combining various transportation schemes stated earlier has been proposed.
References
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Journal ArticleDOI

Rapid droplet mixers for digital microfluidic systems.

TL;DR: This paper studies the effects of varying droplet aspect ratios on linear-array droplet mixers, and proposes mixing strategies applicable for both high and low aspect ratio systems, and presents a split-and-merge mixer that takes advantage of the ability to perform droplet splitting at these ratios.
Journal ArticleDOI

Conceptual and methodological issues relevant to cytokine and inflammatory marker measurements in clinical research.

TL;DR: Measurements of peripheral levels of inflammatory markers can add important mechanistic elements to human subject research, but careful attention to conceptual and methodological considerations is essential, especially when using novel technologies.
Journal ArticleDOI

Microfluidics-Based Biochips: Technology Issues, Implementation Platforms, and Design-Automation Challenges

TL;DR: The proposed top-down design-automation approach is expected to relieve biochip users from the burden of manual optimization of bioassays, time-consuming hardware design, and costly testing and maintenance procedures, and it will facilitate the integration of fluidic components with a microelectronic component in next-generation systems-on-chips (SOCs).
Proceedings ArticleDOI

Droplet Routing in the Synthesis of Digital Microfluidic Biochips

TL;DR: This work develops the first systematic droplet routing method that can be integrated with biochip synthesis, which minimizes the number of cells used fordroplet routing, while satisfying constraints imposed by throughput considerations and fluidic properties.
Journal ArticleDOI

High-level synthesis of digital microfluidic biochips

TL;DR: This work proposes a system design methodology that attempts to apply classical high-level synthesis techniques to the design of digital microfluidic biochips and develops an optimal scheduling strategy based on integer linear programming and two heuristic techniques that scale well for large problem instances.
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