Journal ArticleDOI
Genome-wide identification and evolution of the PIN-FORMED (PIN) gene family in Glycine max
Yuan Liu,Haichao Wei +1 more
TLDR
This research retrieved 23 GmPIN genes from the latest updated G. max genome database and focused on the artificial selection of the soybean PIN genes, providing useful and comprehensive basic information for understanding Gm PIN genes.Abstract:
Soybean (Glycine max) is one of the most important crop plants. Wild and cultivated soybean varieties have significant differences worth further investigation, such as plant morphology, seed size, ...read more
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Journal ArticleDOI
The PIN-FORMED Auxin Efflux Carriers in Plants.
Jing-Jing Zhou,Jie Luo +1 more
TL;DR: The information provided by this review will shed new light on the asymmetric auxin-distribution-dependent development processes mediated by PIN transporters in plants.
Journal ArticleDOI
Auxin enhances grafting success in Carya cathayensis (Chinese hickory)
R. M. Saravana Kumar,Liu Xiao Gao,Hu Wei Yuan,Dong Bin Xu,Zhao Liang,Shen Chen Tao,Wenbin Guo,Dao Liang Yan,Bing Song Zheng,Johan Edqvist +9 more
TL;DR: It is demonstrated that application of the auxin indole-3-acetic acid promotes the grafting process in hickory, whereas application ofThe auxin transport inhibitor 1-N-naphthylphthalamic acid inhibits the grafted process.
Journal ArticleDOI
Exogenous Application of Phytohormones Promotes Growth and Regulates Expression of Wood Formation-Related Genes in Populus simonii × P. nigra.
Yuan Hongmei,Zhao Lijuan,Wendong Guo,Ying Yu,Lei Tao,Liguo Zhang,Song Xixia,Wengong Huang,Cheng Lili,Chen Jing,Fengzhi Guan,Guangwen Wu,Huiyu Li +12 more
TL;DR: The roles played by phytohormones in plant growth are revealed and the foundation for exploring molecular regulatory mechanisms of wood formation in Populus is laid.
Journal ArticleDOI
Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism
TL;DR: In this paper , the role of the PIN-FORMED (PIN) family genes in root gravitropism was investigated in rice, and it was shown that these genes not only play a vital role in regulating rice architecture, but also function in regulating root gravity by the integration of light and nutrient signals.
References
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Journal ArticleDOI
MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets
TL;DR: The latest version of the Molecular Evolutionary Genetics Analysis (Mega) software, which contains many sophisticated methods and tools for phylogenomics and phylomedicine, has been optimized for use on 64-bit computing systems for analyzing larger datasets.
Journal ArticleDOI
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna,Matthew Hanna,Eric Banks,Andrey Sivachenko,Kristian Cibulskis,Andrew Kernytsky,Kiran V. Garimella,David Altshuler,Stacey Gabriel,Mark J. Daly,Mark A. DePristo +10 more
TL;DR: The GATK programming framework enables developers and analysts to quickly and easily write efficient and robust NGS tools, many of which have already been incorporated into large-scale sequencing projects like the 1000 Genomes Project and The Cancer Genome Atlas.
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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice across a Large Model Space
Fredrik Ronquist,Maxim Teslenko,Paul van der Mark,Daniel L. Ayres,Aaron E. Darling,Sebastian Höhna,Bret Larget,Liang Liu,Marc A. Suchard,John P. Huelsenbeck +9 more
TL;DR: The new version provides convergence diagnostics and allows multiple analyses to be run in parallel with convergence progress monitored on the fly, and provides more output options than previously, including samples of ancestral states, site rates, site dN/dS rations, branch rates, and node dates.
Journal ArticleDOI
The variant call format and VCFtools
Petr Danecek,Adam Auton,Gonçalo R. Abecasis,Cornelis A. Albers,Eric Banks,Mark A. DePristo,Robert E. Handsaker,Gerton Lunter,Gabor T. Marth,Stephen T. Sherry,Gilean McVean,Richard Durbin +11 more
TL;DR: VCFtools is a software suite that implements various utilities for processing VCF files, including validation, merging, comparing and also provides a general Perl API.
Journal ArticleDOI
The evolutionary fate and consequences of duplicate genes
Michael Lynch,John S. Conery +1 more
TL;DR: Although duplicate genes may only rarely evolve new functions, the stochastic silencing of such genes may play a significant role in the passive origin of new species.