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Journal ArticleDOI

Heterozygote excess in a self-incompatible and partially clonal forest tree species -- Prunus avium L.

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TLDR
The results revealed that clonality probably explains significant negative FIS in wild cherry populations when considering all individuals, and more theoretical effort is needed to develop expectations and hypotheses, and test them in the case of species combining self‐incompatibility and partially asexual reproduction.
Abstract
Wild cherry (Prunus avium L.), a partially asexual self-incompatible forest tree, shows heterozygote excess, which is a poorly studied phenomenon. In three natural populations, we found significant heterozygote excess at almost all investigated loci (eight microsatellites and markers for the self-incompatibility locus). We examined four hypotheses to account for this observed heterozygote excess. First, negative F(IS) can result from a lack of selfed progeny in small populations of outcrossing species. A second explanation for negative F(IS) is selection during the life cycle of the most heterozygous individuals. A third explanation is negative assortative mating when reproduction occurs between individuals bearing phenotypes more dissimilar than by chance. The last explanation for negative F(IS) relies on asexual reproduction. Expectations for each hypothesis were tested using empirical data. Patterns of F(IS) differed among loci. Nevertheless, our experimental results did not confirm the small sample size hypothesis. Although one locus is probably under a hitch-hiking effect from the SI locus, we rejected the effect of the self-incompatibility locus for the genome as a whole. Similarly, although one locus showed a clear pattern consistent with the selection of heterozygous individuals, the heterosis effect over the whole genome was rejected. Finally, our results revealed that clonality probably explains significant negative F(IS) in wild cherry populations when considering all individuals. More theoretical effort is needed to develop expectations and hypotheses, and test them in the case of species combining self-incompatibility and partially asexual reproduction.

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Journal ArticleDOI

The evolutionary ecology of clonally propagated domesticated plants.

TL;DR: It is argued that widespread notions about their evolution under domestication are oversimplified, and that clonal propagated crops offer rich material for evolutionary studies, and how their mixed clonal/sexual reproductive systems function is explored.
Journal ArticleDOI

Vicariance patterns in the Mediterranean Sea: East-west cleavage and low dispersal in the endemic seagrass Posidonia oceanica

TL;DR: This work investigated the biogeography and dispersal of P. oceanica at various spatial scales in order to assess the influence of different evolutionary factors shaping the distribution of genetic diversity in this species.
Journal ArticleDOI

Population structure and genetic bottleneck in sweet cherry estimated with SSRs and the gametophytic self-incompatibility locus.

TL;DR: This study provides insights into domestication events of cherry, however, requires confirmation on a larger sampling scheme for both sweet cherry landraces and wild cherry.
Journal ArticleDOI

Construction of an intra-specific sweet cherry (Prunus avium L.) genetic linkage map and synteny analysis with the Prunus reference map

TL;DR: Linkage maps of the sweet cherry cultivar ‘Emperor Francis’ and the wild forest cherry ‘New York 54’ were constructed using primarily simple sequence repeat (SSR) markers and gene-derived markers with known positions on the Prunus reference map suggesting that the cherry genome is colinear with that of the other diploid PrunUS species.
Journal ArticleDOI

Genetic diversity in adult and seedling populations of Primula vulgaris in a fragmented agricultural landscape

TL;DR: Investigation of genetic variation and structure in adult and seedling Primula vulgaris shows a significant loss of observed heterozygosity, a trend for higher inbreeding levels (FIS), and higher differentiation (FST) between populations compared to the adult generation.
References
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Journal ArticleDOI

Estimating F-statistics for the analysis of population structure.

TL;DR: The purpose of this discussion is to offer some unity to various estimation formulae and to point out that correlations of genes in structured populations, with which F-statistics are concerned, are expressed very conveniently with a set of parameters treated by Cockerham (1 969, 1973).
Book

Molecular Evolutionary Genetics

Masatoshi Nei
TL;DR: Recent developments of statistical methods in molecular phylogenetics are reviewed and it is shown that the mathematical foundations of these methods are not well established, but computer simulations and empirical data indicate that currently used methods produce reasonably good phylogenetic trees when a sufficiently large number of nucleotides or amino acids are used.
Book

Principles of population genetics

TL;DR: Genetic and Phenotypic Variation Organisation of Genetic Variation Random Genetic Drift Mutation and the Neutral Theory Darwinian Selection Inbreeding, Population Subdivision, and Migration Molecular Population Genetics Evolutionary Quantitative Genetics Population Genomics Human Population Genetics
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