Journal ArticleDOI
Repeatability of clades as a criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa.
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TLDR
This study represents the most extensive taxonomic sampling effort to date to collect new molecular characters for phylogenetic analysis of acanthomorph fishes, with new and reliable clades emerging from this study of the acanthomorphic radiation.About:
This article is published in Molecular Phylogenetics and Evolution.The article was published on 2003-02-01. It has received 350 citations till now. The article focuses on the topics: Acanthomorpha & Zoarcoidei.read more
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Phylogeny based on two mtDNA genes (Co-1, Cyt-B) among Sculpins (Scorpaeniformes, Cottidae) and some other scorpionfish in the Russian Far East
TL;DR: A concordant increase in the distance score substantiates the concept that speciation in the order Scorpaeniformes mostly follows a geographic mode, as the rank of taxa grows, with the minimum at intraspecies level.
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The continental fish fauna of the Late Cretaceous (Santonian) Iharkút locality (Bakony Mountains, Hungary)
TL;DR: The gar remains described here further support the Atractosteus sp.
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Systematics of the Cosmospora viliuscula species complex.
TL;DR: It is demonstrated that Cosmospora viliuscula represents a diverse species complex comprising more than 10 species, and seven new species are described, including three single-strain lineages, and the sexual states of C. arxii and C. khandalensis are described for the first time.
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Origins and relationships of the Pleuronectoidei: Molecular and morphological analysis of living and fossil taxa
TL;DR: A total evidence phylogeny that places fossil flatfishes among extant lineages is constructed and finds polyphyly or paraphyly of two flatfish families, the Paralichthyidae and the Rhombosoleidae, and supports the creation of two additional families to resolve their non‐monophyletic status.
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Protein Structural Influences in Rhodopsin Evolution
TL;DR: A model is presented for including structural influences on rate in phylogenetic inference of vertebrate rhodopsin sequences and potentially defined a class enriched in homoplasious residues.
References
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Journal ArticleDOI
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Naruya Saitou,Masatoshi Nei +1 more
TL;DR: The neighbor-joining method and Sattath and Tversky's method are shown to be generally better than the other methods for reconstructing phylogenetic trees from evolutionary distance data.
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Confidence limits on phylogenies: an approach using the bootstrap.
TL;DR: The recently‐developed statistical method known as the “bootstrap” can be used to place confidence intervals on phylogenies and shows significant evidence for a group if it is defined by three or more characters.
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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
TL;DR: ClUSTAL X is a new windows interface for the widely-used progressive multiple sequence alignment program CLUSTAL W, providing an integrated system for performing multiple sequence and profile alignments and analysing the results.
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MODELTEST: testing the model of DNA substitution.
David Posada,Keith A. Crandall +1 more
TL;DR: The program MODELTEST uses log likelihood scores to establish the model of DNA evolution that best fits the data.