Journal ArticleDOI
Repeatability of clades as a criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa.
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TLDR
This study represents the most extensive taxonomic sampling effort to date to collect new molecular characters for phylogenetic analysis of acanthomorph fishes, with new and reliable clades emerging from this study of the acanthomorphic radiation.About:
This article is published in Molecular Phylogenetics and Evolution.The article was published on 2003-02-01. It has received 350 citations till now. The article focuses on the topics: Acanthomorpha & Zoarcoidei.read more
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Phylogeny of Glaucosomatidae inferred from molecular evidence
S.-H. Liu,Wen-Bin Yeh,H.-K. Mok +2 more
TL;DR: Both molecular and morphological evidences indicate that Glaucosoma magnificum is the plesiomorphic sister species of other glaucosomatid species, and that G. buergeri is the species status of G. hebraicum.
Journal Article
The Pottiaceae s.str. as an evolutionary lazarus taxon (Papers to Commemorate the 100th Issue of the Journal of the Hattori Botanical Laboratory) -- (Bryology)
TL;DR: Past evolutionary schema is evaluated in light of this theoretically acceptable exception to Dollo's Law that complex traits are never re-evolved, and two features of the Pottiaceae are suggested to be likewise homoiologous.
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Complete mitochondrial genome of the Antarctic dragonfish, Parachaenichthys charcoti (Notothenioidei: Bathydraconidae).
Jae Soon Oh,Seunghyun Kang,Do Hwan Ahn,Mi Kyeong Kim,Hyoungseok Lee,Young Min Chi,Hyun Woo Park +6 more
TL;DR: Thecomplete mitochondrial genome of the Antarctic dragonfish, Parachaenichthys charcoti, is described, representing the first complete mitochondrial genome sequence of the family Bathydraconidae, and will be useful for phylogenetic, evolutionary and functional studies of Antarctic Notothenioids.
Journal ArticleDOI
Evaluating strategies of phylogenetic analyses by the coherence of their results
TL;DR: An approach to identify, among several strategies of phylogenetic analysis, those producing the most accurate results, based on the hypothesis that the more a result is reproduced from independent data, the more it reflects the historical signal common to the analysed data.
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New insights into the diversity of cryptobenthic Cirripectes blennies in the Mascarene Archipelago sampled using Autonomous Reef Monitoring Structures (ARMS)
Marion Couëdel,Agnès Dettai,Mireille Guillaume,Fleur Bruggemann,Sophie Bureau,Baptiste Frattini,Amélie Verde Ferreira,Jean‐Lindsay Azie,J. Henrich Bruggemann +8 more
TL;DR: In this article , complete mitochondrial genomes and nuclear rhodopsin genes were sequenced for 39 specimens collected with ARMS deployed on outer reef slopes at Reunion and Rodrigues islands.
References
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The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Naruya Saitou,Masatoshi Nei +1 more
TL;DR: The neighbor-joining method and Sattath and Tversky's method are shown to be generally better than the other methods for reconstructing phylogenetic trees from evolutionary distance data.
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Confidence limits on phylogenies: an approach using the bootstrap.
TL;DR: The recently‐developed statistical method known as the “bootstrap” can be used to place confidence intervals on phylogenies and shows significant evidence for a group if it is defined by three or more characters.
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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
TL;DR: ClUSTAL X is a new windows interface for the widely-used progressive multiple sequence alignment program CLUSTAL W, providing an integrated system for performing multiple sequence and profile alignments and analysing the results.
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MODELTEST: testing the model of DNA substitution.
David Posada,Keith A. Crandall +1 more
TL;DR: The program MODELTEST uses log likelihood scores to establish the model of DNA evolution that best fits the data.