Journal ArticleDOI
Repeatability of clades as a criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa.
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TLDR
This study represents the most extensive taxonomic sampling effort to date to collect new molecular characters for phylogenetic analysis of acanthomorph fishes, with new and reliable clades emerging from this study of the acanthomorphic radiation.About:
This article is published in Molecular Phylogenetics and Evolution.The article was published on 2003-02-01. It has received 350 citations till now. The article focuses on the topics: Acanthomorpha & Zoarcoidei.read more
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The Antarctic fish genus Artedidraco is paraphyletic (Teleostei, Notothenioidei, Artedidraconidae)
Guillaume Lecointre,Cyril Gallut,Céline Bonillo,Arnaud Couloux,Catherine Ozouf-Costaz,Agnès Dettai +5 more
TL;DR: The genus Artedidraco is not monophyletic, confirming the preliminary relationships found by Derome et al. ( 2002), and there is a trend toward a decrease in the number of epipleural ribs and an increase in number of pleural ribs along the tree.
One, two, or several? How many lymnaeid genera are there?
TL;DR: The problem of generic classification of the basommatophoran family Lymnaeidae Rafinesque, 1815 is reviewed as well as recent theoretical approaches to genus delineation in the zoological systematics.
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Mitogenomic phylogeny of the Percichthyidae and Centrarchiformes (Percomorphaceae): comparison with recent nuclear gene-based studies and simultaneous analysis.
Sébastien Lavoué,Kouji Nakayama,Dean R. Jerry,Yusuke Yamanoue,Naoki Yagishita,Nobuaki Suzuki,Mutsumi Nishida,Masaki Miya +7 more
TL;DR: This analysis indicates that the Centrarchiformes are divided into three lineages and the superfamily Cirrhitoidea is monophyletic as well as the temperate and freshwater centrarchiform perch-like fishes, and clarifies some of the relationships within the freshwater Percichthyidae.
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Historical biogeography of a new antitropical clade of temperate freshwater fishes
TL;DR: The evolutionary origin and historical biogeography of temperate, freshwater perch‐like fishes are examined within a molecular phylogenetic framework to challenge hypotheses that account for the evolution of intercontinental faunas.
References
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The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Naruya Saitou,Masatoshi Nei +1 more
TL;DR: The neighbor-joining method and Sattath and Tversky's method are shown to be generally better than the other methods for reconstructing phylogenetic trees from evolutionary distance data.
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Confidence limits on phylogenies: an approach using the bootstrap.
TL;DR: The recently‐developed statistical method known as the “bootstrap” can be used to place confidence intervals on phylogenies and shows significant evidence for a group if it is defined by three or more characters.
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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
TL;DR: ClUSTAL X is a new windows interface for the widely-used progressive multiple sequence alignment program CLUSTAL W, providing an integrated system for performing multiple sequence and profile alignments and analysing the results.
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MODELTEST: testing the model of DNA substitution.
David Posada,Keith A. Crandall +1 more
TL;DR: The program MODELTEST uses log likelihood scores to establish the model of DNA evolution that best fits the data.