Journal ArticleDOI
Repeatability of clades as a criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa.
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TLDR
This study represents the most extensive taxonomic sampling effort to date to collect new molecular characters for phylogenetic analysis of acanthomorph fishes, with new and reliable clades emerging from this study of the acanthomorphic radiation.About:
This article is published in Molecular Phylogenetics and Evolution.The article was published on 2003-02-01. It has received 350 citations till now. The article focuses on the topics: Acanthomorpha & Zoarcoidei.read more
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Interrelationships of Gasterosteiformes (Actinopterygii, Percomorpha)
Yazdan Keivany,Joseph S. Nelson +1 more
TL;DR: Support was provided to the hypothesis that the order Gasterosteiformes (including Hypoptychidae and Indostomidae) is a monophyletic group and three suborders in GasterOSTeiforme are recognized.
Journal ArticleDOI
Rhodopsin gene copies in Japanese eel originated in a teleost-specific genome duplication.
Yoji Nakamura,Motoshige Yasuike,Miyuki Mekuchi,Yuki Iwasaki,Nobuhiko Ojima,Atushi Fujiwara,Seinen Chow,Kenji Saitoh +7 more
TL;DR: Syntenic and phylogenetic analyses suggest that the duplication of rhodopsin gene in Japanese eel predated the divergence of eel and arowana and have remained till the present in eels with distinct functional roles.
Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish
TL;DR: In this article, the authors obtained alignments of 274 orthologue groups for 26 scientifically and commercially important actinopterygians, representing 17 out of 44 orders within the class ACTINOPterygii, using these alignments and probabilistic methods.
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Molecular Phylogenetics of the Clingfishes (Teleostei: Gobiesocidae)—Implications for Classification
Kevin W. Conway,Kevin W. Conway,Cragen D. King,Adam P. Summers,Daemin Kim,Philip A. Hastings,Glenn I. Moore,Samuel P. Iglésias,Mark V. Erdmann,Mark V. Erdmann,Carole C. Baldwin,Graham Short,Graham Short,Kyoji Fujiwara,Thomas Trnski,Gary Voelker,Lukas Rüber,Lukas Rüber +17 more
TL;DR: Gobiesocidae are a moderate-sized family (currently 182 species, 51 genera) of predominantly coastal marine fishes, commonly referred to as clingfishes as mentioned in this paper, which are divided into two subfamilies: Cheilobranchinae and Gobiesocinae.
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Phylogenetic Relationships among Fishes in the Order Zeiformes Based on Molecular and Morphological Data
Terry Grande,W. Calvin Borden,W. Calvin Borden,Mark V. H. Wilson,Mark V. H. Wilson,Lindsay Scarpitta +5 more
TL;DR: The results are suggestive of a rapid diversification among the major lineages of Zeiformes during the Late Cretaceous and revised outgroups affected the phylogenetic conclusions, especially those based on morphology.
References
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The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Naruya Saitou,Masatoshi Nei +1 more
TL;DR: The neighbor-joining method and Sattath and Tversky's method are shown to be generally better than the other methods for reconstructing phylogenetic trees from evolutionary distance data.
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Confidence limits on phylogenies: an approach using the bootstrap.
TL;DR: The recently‐developed statistical method known as the “bootstrap” can be used to place confidence intervals on phylogenies and shows significant evidence for a group if it is defined by three or more characters.
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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
TL;DR: ClUSTAL X is a new windows interface for the widely-used progressive multiple sequence alignment program CLUSTAL W, providing an integrated system for performing multiple sequence and profile alignments and analysing the results.
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MODELTEST: testing the model of DNA substitution.
David Posada,Keith A. Crandall +1 more
TL;DR: The program MODELTEST uses log likelihood scores to establish the model of DNA evolution that best fits the data.