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Structure of transfer RNAs: similarity and variability.

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TLDR
The increasing number of X‐ray structures of free, protein‐ and ribosome‐bound tRNA, reveal structural details accounting for the identity of the 22 tRNA families and for the multifunctionality of a given family, and the structural role of post‐transcriptional tRNA modifications is being deciphered.
Abstract
Transfer RNAs (tRNAs) are ancient molecules whose origin goes back to the beginning of life on Earth. Key partners in the ribosome-translation machinery, tRNAs read genetic information on messenger RNA and deliver codon specified amino acids attached to their distal 3'-extremity for peptide bond synthesis on the ribosome. In addition to this universal function, tRNAs participate in a wealth of other biological processes and undergo intricate maturation events. Our understanding of tRNA biology has been mainly phenomenological, but ongoing progress in structural biology is giving a robust physico-chemical basis that explains many facets of tRNA functions. Advanced sequence analysis of tRNA genes and their RNA transcripts have uncovered rules that underly tRNA 2D folding and 3D L-shaped architecture, as well as provided clues about their evolution. The increasing number of X-ray structures of free, protein- and ribosome-bound tRNA, reveal structural details accounting for the identity of the 22 tRNA families (one for each proteinogenic amino acid) and for the multifunctionality of a given family. Importantly, the structural role of post-transcriptional tRNA modifications is being deciphered. On the other hand, the plasticity of tRNA structure during function has been illustrated using a variety of technical approaches that allow dynamical insights. The large range of structural properties not only allows tRNAs to be the key actors of translation, but also sustain a diversity of unrelated functions from which only a few have already been pinpointed. Many surprises can still be expected.

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Citations
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Journal ArticleDOI

Biosynthesis and Function of Posttranscriptional Modifications of Transfer RNAs

TL;DR: A global survey of tRNA modification enzymes shows that the functional constraints that drive the presence of modifications are often conserved, but the solutions used to fulfill these constraints differ among different kingdoms, organisms, and species.
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Introduction to protein crystallization.

TL;DR: A variety of approaches have been developed that combine the spectrum of factors that effect and promote crystallization, and among the most widely used are vapor diffusion, dialysis, batch and liquid-liquid diffusion.
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Transfer RNA modifications: nature's combinatorial chemistry playground.

TL;DR: Following synthesis, tRNAs are peppered by numerous chemical modifications which may differentially affect a tRNA's structure and function.
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Early bioenergetic evolution

TL;DR: This paper outlines an energetically feasible path from a particular inorganic setting for the origin of life to the first free-living cells, and focuses on the main evolutionary transitions in early bioenergetic evolution.
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tRNA Modifications: Impact on Structure and Thermal Adaptation.

TL;DR: It was shown that tRNA modifications are important for temperature adaptation in thermophilic as well as psychrophilic organisms, as they modulate rigidity and flexibility of the transcripts, respectively.
References
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Journal ArticleDOI

Structure of the 70S Ribosome Complexed with mRNA and tRNA

TL;DR: The crystal structure of the bacterial 70S ribosome refined to 2.8 angstrom resolution reveals atomic details of its interactions with messenger RNA (mRNA) and transfer RNA (t RNA) and metal ions also stabilize the intersubunit interface.
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Structure of a Ribonucleic Acid

TL;DR: The complete nucleotide sequence of an alanine transfer RNA, isolated from yeast, has been determined and is the first nucleic acid for which the structure is known.
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A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)

TL;DR: The data suggest that tRFs are not random by-products of tRNA degradation or biogenesis, but an abundant and novel class of short RNAs with precise sequence structure that have specific expression patterns and specific biological roles.
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Structure of yeast phenylalanine tRNA at 3 A resolution.

TL;DR: The structure of a tRNA has been determined by isomorphous replacement but the interactions which maintain the tertiary structure are of a novel type and this model differs significantly from one which has recently been proposed.
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GtRNAdb: a database of transfer RNA genes detected in genomic sequence

TL;DR: The Genomic tRNA Database (GtRNAdb), currently including over 74 000 tRNA genes predicted from 740 species, is created, currently including information by isotype and genetic locus, easily downloadable primary sequences, graphical secondary structures and multiple sequence alignments.
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Trending Questions (1)
What is the structure of tRNA?

The paper provides information on the structure of tRNA, including its 2D folding and 3D L-shaped architecture. It also mentions the six subdomains of a canonical cloverleaf structure and the structural role of post-transcriptional tRNA modifications.