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Testing structural identifiability by a simple scaling method.

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TLDR
This work presents a new analytical method to test structural identifiability of models based on ordinary differential equations, based on the invariance of the equations under the scaling transformation of its parameters.
Abstract
Successful mathematical modeling of biological processes relies on the expertise of the modeler to capture the essential mechanisms in the process at hand and on the ability to extract useful information from empirical data. A model is said to be structurally unidentifiable, if different quantitative sets of parameters provide the same observable outcome. This is typical (but not exclusive) of partially observed problems in which only a few variables can be experimentally measured. Most of the available methods to test the structural identifiability of a model are either too complex mathematically for the general practitioner to be applied, or require involved calculations or numerical computation for complex non-linear models. In this work, we present a new analytical method to test structural identifiability of models based on ordinary differential equations, based on the invariance of the equations under the scaling transformation of its parameters. The method is based on rigorous mathematical results but it is easy and quick to apply, even to test the identifiability of sophisticated highly non-linear models. We illustrate our method by example and compare its performance with other existing methods in the literature.

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Journal ArticleDOI

Competitive binding of STATs to receptor phospho-Tyr motifs accounts for altered cytokine responses.

TL;DR: The authors found that IL-27 induces more sustained STAT1 phosphorylation than IL-6, with the two cytokines inducing comparable levels of STAT3 phosphorgylation, and showed that receptor and STATs concentrations critically contribute to shape cytokine responses and generate functional pleiotropy in health and disease.
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Comparing antiviral strategies against COVID-19 via multi-scale within host modelling

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Journal ArticleDOI

Controlling microbial co-culture based on substrate pulsing can lead to stability through differential fitness advantages

TL;DR: This work predicted the dynamics of diauxic shift for both species based on a cybernetic approach and observed that the yeast population exhibited an increased phenotypic diversification process in co-culture compared with mono-culture, suggesting that this mechanism could be the basis of the metabolic fitness of the yeast.
Journal ArticleDOI

Symmetries in Dynamic Models of Biological Systems: Mathematical Foundations and Implications

Alejandro F. Villaverde
- 25 Feb 2022 - 
TL;DR: The authors provides an overview of the types of symmetries that appear in dynamic models, the mathematical tools available for their analyses, the ways in which they are related to system properties, and the implications for biological modeling.
Posted ContentDOI

Genome assembly and isoform analysis of a highly heterozygous New Zealand fisheries species, the tarakihi (<i>Nemadactylus macropterus</i>)

TL;DR: The first complete genome assembly of the marine teleost tarakihi ( Nemadactylus macropterus ) was reported in this article , which was 568 Mb long and consisted of 1,214 scaffolds with an N50 of 3.37 Mb.
References
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Journal ArticleDOI

Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection

TL;DR: Treatment of infected patients with ABT-538 causes plasma HIV-1 levels to decrease exponentially and CD4 lymphocyte counts to rise substantially, indicating that replication of HIV- 1 in vivo is continuous and highly productive, driving the rapid turnover ofCD4 lymphocytes.
Journal ArticleDOI

On structural identifiability

TL;DR: In this article, structural identifiability is introduced to answer questions such as: To what extent is it possible to get insight into the internal structure of a system from input-output measurements? What experiments are necessary in order to determine the internal couplings uniquely?
Journal ArticleDOI

On global identifiability for arbitrary model parametrizations

TL;DR: This contribution shows how global identifiability for an arbitrary model structure (basically with analytic non-linearities) can be analyzed using concepts and algorithms from differential algebra.
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