Showing papers on "Atlantic cod published in 2007"

Migratory behaviour of Atlantic cod Gadus morhua: natal homing is the prime stock-separating mechanism

Abstract: The migrations of cod (>37 cm) in the Skagerrak and Kattegat were investigated in an archival tagging programme conducted between 2003 and 2006. Cod tagged at different localities showed non-random, directional movements in agreement with the hypothesis that the cod popula- tion in this region comprises a mixture of resident and migratory stocks. Cod tagged off the eastern Skagerrak coast migrated towards the North Sea, predominantly during the spawning period January to April, and most of these fish returned to the east- ern Skagerrak later in spring. The putative spawn- ing runs were associated with changes in habitat, as the migratory cod visited shallower and colder waters. In contrast, concurrently tagged cod in the Kattegat and the Gullmar Fjord (Skagerrak) showed a higher degree of resident behaviour. However, some fish also left these 2 areas for migration towards the North Sea, predominantly during the spawning period, in accordance with the theory that recruits from the North Sea will eventually leave the Kattegat and the eastern Skagerrak coast for their natal spawning sites. Taken together, these findings imply natal homing behaviour to be the intrinsic mechanism which underlies population separation in marine fishes.

Spatial scale of genetic structuring in coastal cod Gadus morhua and geographic extent of local populations

Abstract: We estimated the spatial scale of genetically distinguishable populations of coastal Atlantic cod Gadus morhua using microsatellite DNA markers. Significant overall heterogeneity in allele frequencies was found among 5 cod samples (n = 493) along a 79 km segment of the Norwe- gian Skagerrak coast (FST = 0.0013; p = 0.021). Most (3 out of 4) samples separated by less than 30 km were genetically highly similar (FST < 0), whereas more distantly separated samples were typically genetically different. This genetic differentiation pattern indicates a patchy population structure with local coastal cod populations being limited in geographic extent to approx. 30 km or less. The spatial structure is thus on the scale of local fjords, suggesting a role for local topography in shaping popu- lation structure. The population structuring of coastal cod is more fine-scaled than hitherto reported, but is consistent with mark-recapture studies and data on egg distributions, and emphasises the need to focus on local populations in the management of marine fishes.

Egg distribution, bottom topography and small-scale cod population structure in a coastal marine system

Abstract: Coastal marine species with pelagic egg and larval stages, such as the Atlantic cod Gadus morhua, can be structured into genetically distinct local populations on a surprisingly small geographic scale considering their dispersal potential. Mechanisms responsible for such small-scale genetic structure may involve homing of adults to their natal spawning grounds, but also local reten- tion of pelagic eggs and larvae. For example, spawning within sheltered fjord habitats is expected to favour local retention of early life stages. Here, we studied the distribution of cod eggs along inshore- offshore transects in 20 Norwegian fjords. The general pattern exhibited across all fjords was a higher concentration of cod eggs inside the fjords than further offshore. In particular, fjords with shal- low sills (model threshold 37 m) show an abrupt reduction in egg density over the sill. This study pro- vides empirical support for an offspring retention hypothesis, which may help to explain the mainte- nance of local population structure in pelagic marine systems.

Dispersal modeling of fish early life stages: sensitivity with application to Atlantic cod in the western Gulf of Maine

Abstract: As an initial step in establishing mechanistic relationships between environmental vari- ability and recruitment in Atlantic cod Gadhus morhua along the coast of the western Gulf of Maine, we assessed transport success of larvae from major spawning grounds to nursery areas with particle tracking using the unstructured grid model FVCOM (finite volume coastal ocean model). In coastal areas, dispersal of early planktonic life stages of fish and invertebrate species is highly dependent on the regional dynamics and its variability, which has to be captured by our models. With state-of-the- art forcing for the year 1995, we evaluate the sensitivity of particle dispersal to the timing and loca- tion of spawning, the spatial and temporal resolution of the model, and the vertical mixing scheme. A 3 d frequency for the release of particles is necessary to capture the effect of the circulation variabil- ity into an averaged dispersal pattern of the spawning season. The analysis of sensitivity to model setup showed that a higher resolution mesh, tidal forcing, and current variability do not change the general pattern of connectivity, but do tend to increase within-site retention. Our results indicate strong downstream connectivity among spawning grounds and higher chances for successful trans- port from spawning areas closer to the coast. The model run for January egg release indicates 1 to 19% within-spawning ground retention of initial particles, which may be sufficient to sustain local populations. A systematic sensitivity analysis still needs to be conducted to determine the minimum mesh and forcing resolution that adequately resolves the complex dynamics of the western Gulf of Maine. Other sources of variability, i.e. large-scale upstream forcing and the biological environment, also need to be considered in future studies of the interannual variability in transport and survival of the early life stages of cod.

Warm water occupancy by North Sea cod

Abstract: The North Sea has warmed in recent years and there is an ongoing debate into how this is affecting the distribution of fishes and other marine organisms. Of particular interest is the commercially important Atlantic cod (Gadus morhua L.), which has declined sharply in abundance in the North Sea over the past 20 years. Observations of the temperature experienced by 129 individual cod throughout the North Sea were made during a large-scale electronic tagging programme conducted between 1999 and 2005. We asked whether individual cod fully occupied the thermal habitat available to them. To this end, we compared the temperature experience of cod with independently measured contemporaneous sea-bottom temperature data. The majority of cod experienced a warmer fraction of the sea than was potentially available to them. By summer, most of the individuals in the south experienced temperatures considered superoptimal for growth. Cooler waters were within the reach of the cod and a small number of individuals migrated to areas that allowed them to experience lower temperatures, indicating that the cod had the capacity to find cooler water. Most did not, however, suggesting that the changing thermal regime of the North Sea is not yet causing adult cod to move to cooler waters.

Sequence and expression analysis of an interferon stimulated gene (ISG15) from Atlantic cod (Gadus morhua L.).

Abstract: Suppression subtractive hybridization was used to examine gene expression in Atlantic cod head kidney cells treated with polyinosinic polycytidylic acid (poly I:C). One of the most abundant genes was ISG15, showing 24–53% amino acid similarity to ISG15 from both mammals and teleosts. The promoter was cloned by genome walking and three potential interferon-stimulated response elements (ISREs) were identified. Analysis of the gene structure revealed a single intron in the 5′ untranslated region (UTR) of cod ISG15, which also seems to be present in zebrafish and pufferfish ISG15. A quantitative real time PCR assay was established to monitor the gene expression of cod ISG15. Injection of cod with poly I:C strongly induced the expression of ISG15 in all organs investigated. Stimulation was most pronounced the first day with a gradual decline the following days. The expression of ISG15 in head kidney cells was also induced in vitro by treatment with poly I:C, but not significantly with LPS. However, injection of formalin killed Vibrio anguillarum-induced ISG15 expression in head kidney.

Microsatellite variation in cod Gadus morhua throughout its geographic range

Abstract: Previous genetic studies using neutral markers such as allozymes, mtDNA and minisatellite loci have demonstrated varying amounts of population structure in cod Gadus morhua throughout the Atlantic. Microsatellite loci, which are potentially the most informative of presently available neutral genetic markers, have been applied extensively within western and eastern Atlantic areas but not on a range-wide basis. In the present study, six microsatellite DNA loci were used to screen cod samples from nine locations throughout the geographic range from the Scotian Shelf in the West Atlantic to the Barents and Baltic Seas in the east. Overall FST value was 0·03 (P= < 0·001) across all samples. Statistically significant population differences over all loci combined were evident between more geographically distant samples, using either heterogeneity tests or FST analysis, with at least one locus showing significant differences between all samples (prior to Bonferroni correction). A significant correlation was observed between genetic and geographical distance, suggesting a higher level of historical and contemporary gene flow between adjacent populations than more distant populations. Samples from either end of the geographic range (Scotian Shelf and Baltic Sea) were particularly distinct when analysed using the STRUCTURE programme and also showed a high level of self-assignment when individuals of either the Scotian Shelf or Baltic Sea were tested against the entire data set. The present microsatellite study demonstrates a high level of geographic population structure between the western Atlantic, middle and eastern Atlantic and Baltic Sea, and thus, the findings should be useful in devising overall management and conservation strategies for the species.

Influence of diet on growth, condition and reproductive capacity in Newfoundland and Labrador cod (Gadus morhua) : Insights from stable carbon isotopes (δ13C)

Abstract: Cod populations in Newfoundland and Labrador waters have shown differing growth, condition and recruitment since near-universal declines in these properties during the cold period of the late 1980s and early 1990s. To assess the influence of variable prey communities on these parameters, we compared cod energetics and diet in populations off Labrador and the northeast and south coasts of Newfoundland. Many properties were highest in the southern group(s) and lowest in the northern group(s), including growth, somatic condition, liver index and age-at-maturity. Most differences could be explained by variations in diet, as measured by stomach contents and stable carbon isotopes (δ13C). The diet of Labrador cod consisted almost entirely of northern shrimp (Pandalus borealis), and these cod displayed the most benthic δ13C signatures. Northeast cod had a more varied diet that included capelin and other fish, but still had mostly benthic δ13C signatures, suggesting the importance of benthic prey like shrimp in this population. South coast cod exhibited the most varied diet, including capelin (Mallotus villosus), zooplankton, crabs and other fish, and had the most pelagic δ13C signatures. Among and within populations, the benefits of a more pelagic diet in medium-sized (30–69 cm) cod included higher somatic condition, higher liver index (lipid stores) and greater spawning potential (decreased incidence of atresia). It is hypothesized that major rebuilding of Newfoundland and Labrador cod stocks will require a return to a system that supports mostly pelagic feeding (i.e. capelin) in cod.

The role of growth changes in the decline and recovery of North Atlantic cod stocks since 1970

Abstract: Brander, K. M. 2007. The role of growth changes in the decline and recovery of North Atlantic cod stocks since 1970. - ICES Journal of Marine Science, 64: 211-217.

Movements and distribution of cod (Gadus morhua) in the southern North Sea and English Channel : results from conventional and electronic tagging experiments

Abstract: The sub-structure of Atlantic cod (Gadus morhua) stocks in the North Sea has important consequences for fisheries management as the Common Fisheries Policy moves towards a more regional approach. We investigated the movements, distribution and behaviour of cod in the southern North Sea (ICES IVc) and English Channel (ICES VIId) by re-analysing historic data from conventional tagging experiments, and by conducting new experiments with electronic tags. Cod tagged and released in IVc showed a northwards shift in distribution during the feeding season consistent with a homing migration away from spawning grounds along the coasts of the UK and the Netherlands. In contrast, cod tagged and released in VIId did not exhibit a consistent pattern of seasonal movement. Many cod released in VIId were subsequently recaptured close to their release position, although some moved out of the Channel and into the southern North Sea. Overlap between the recapture areas of cod released in the different management areas was no more than 25% in either the spawning or feeding season. Behavioural data from electronic tags suggest that cod in IVc make use of tidal streams to migrate northwards and eastwards in spring, whereas selective tidal stream transport was rarely exhibited by cod tagged and released in VIId. Overall, the evidence suggests that there are behavioural differences between cod in IVc and VIId that limit the mixing of cod from these two areas during the feeding and spawning seasons.

The role of seasonally altering photoperiod in regulating physiology in Atlantic cod (Gadus morhua). Part I. Sexual maturation

Abstract: While the Atlantic cod (Gadus morhua) displays clear seasonality in its reproductive cycle, the exact photic signal that entrains this rhythm is yet undefined. This present work developed a model to describe the photic regulation of reproduction in the species in comparison with other commercially important temperate teleosts. This was achieved through the strategic masking of the natural photoperiod cycle during the first 2 years of life with the application of continuous illumination. The results demonstrated that it is the falling autumnal photoperiod signal after the summer solstice, more specifically after October, that is responsible for recruiting individuals to enter the sexual maturation cycle. Furthermore, in all treatments where this signal was masked through the application of continuous illumination, there was no significant reproductive activity and growth was improved by up to 60% at 27 months posthatch. This information is of particular value to the developing cod aquaculture industry in w...

Spatial anatomy of species survival : Effects of predation and climate-driven environmental variability

Abstract: The majority of survival analyses focus on temporal scales. Consequently, there is a limited understanding of how species survival varies over space and, ultimately, how spatial variability in the environment affects the temporal dynamics of species abundance. Using data from the Barents Sea, we study the spatiotemporal variability of the juvenile Atlantic cod (Gadus morhua) survival. We develop an index of spatial survival based on changes of juvenile cod distribution through their first winter of life (from age-0 to age-1) and study its variability in relation to biotic and abiotic factors. Over the 25 years analyzed (1980–2004), we found that, once the effect of passive drift due to dominant currents is accounted for, the area where age-0 cod survival was lowest coincided with the area of highest abundance of older cod. Within this critical region, the survival of age-0 cod was negatively affected by its own abundance, by that of older cod, and by bottom depth. Furthermore, during cold years, age-0 cod survival increased in the eastern and coldest portion of the examined area, which was typically avoided by older conspecifics. Based on these results we propose that within the examined area top-down mechanisms and predation-driven density dependence can strongly affect the spatial pattern of age-0 cod survival. Climate-related variables can also influence the spatial survival of age-0 cod by affecting their distribution and that of their predators. Results from these and similar studies, focusing on the spatial variability of survival rates, can be used to characterize species habitat quality of marine renewable resources.

Home range and elevated egg densities within an inshore spawning ground of coastal cod

Abstract: Atlantic cod (Gadus morhua) along the Norwegian Skagerrak coast are structured into genetically distinct local populations. Mechanisms contributing to this genetic structure may include spawning site fidelity of adult cod as well as retention of pelagic early life stages close to the spawning grounds. Spawning in sheltered inshore localities is likely to favour retention of eggs and larvae, the opposite situation to offshore spawning. A combined study was made of area utilization by adult cod and the distribution of cod eggs within an inshore locality of the Norwegian Skagerrak coast. The behaviour of adult cod was studied using acoustic telemetry and kernel modelling, and eggs were sampled throughout the spawning season. Generalized additive models were applied to test hypotheses about the spatial dynamics of the eggs, and the best model described a central spawning area that retained its integrity through time. Adult cod were confined to small parts of the study area and remained there throughout the spawning season. The average home range of the adult cod was 27 ha. Overall, the study demonstrated two mechanisms by which coastal (i.e. inshore) cod maintain their population structure: spawning site fidelity and the spatial dynamics of their eggs.

Effects of Gill-Net Fishing on Marine Birds in a Biological Hotspot in the Northwest Atlantic

Abstract: Marine biological hotspots, or areas where high abundances of species overlap in space and time, are ecologically important areas because energy flow through marine food webs, a key ecosystem process, is maximized in these areas. I investigated whether top predators aggregated at persistent spawning sites of a key forage fish species, capelin (Mallotus villosus), on the NE coast of Newfoundland during July and August 2000-2003. By examining the distributional patterns of top predators through ship-based surveys at multiple spatial and temporal scales, I found that the biomasses of birds-dominated by Common Murres (Uria aalge)-and mammals-dominated by whale species-were concentrated along the coast, with a biological hotspot forming near two persistent spawning sites of capelin in all years. The formation of this hotspot was well defined in space and time from middle of July to middle of August, likely coinciding with the spawning chronology of capelin. Within this hotspot, there was a high spatial and temporal overlap of Common Murres and gill nets set to capture Atlantic cod (Gadus morhua). This resulted in breeding murres becoming entangled in gill nets while feeding on spawning capelin. Despite an acknowledged uncertainty of bycatch mortality, estimates for the larger regional-scale area (1936-4973 murres/year; 0.2-0.6% of the breeding population) underestimated mortality relative to estimates within the hotspot (3053-14054 murres/year; 0.4-1.7%). Although fishing effort for Atlantic cod has declined substantially since the groundfish moratorium in 1992, chronic, unnatural, and additive mortality through bycatch continues in coastal Newfoundland. Restricted use of gill nets within this and other biological hotspots during the capelin spawning period appears to be a straightforward application of the "ecological and biologically significant area" management framework in Canada's Oceans Act. This protection would minimize murre bycatch and maintain ecosystem integrity.

Effects of turbidity on the spontaneous and prey-searching activity of juvenile Atlantic cod (Gadus morhua).

Abstract: attenuation m K1 ) had little effect on the foraging rate of juvenile cod. Although this was attributed to cod using chemoreception in conjunction with vision to locate prey, foraging rates may also be maintained by increased activity. Higher activity, however, is energetically costly and may offset benefits from increased foraging return. We examined the effects of turbidity on prey searching and spontaneous activity of juvenile cod in the laboratory, by measuring activity with and without prey cues. Activity of juvenile cod was nonlinearly affected by turbidity and was lower at intermediate turbidity, regardless of the presence of prey odour. Activity increased over time when prey odour was present and decreased when absent, but the effects of prey odour were similar across all turbidity levels. Position in the tank was unaffected by turbidity or prey odour. Reduced activity at intermediate turbidities is likely to offset longer preysearch times. At high turbidity (greater than 17 m K1 ), both longer prey-search times and higher

Thermal sensitivity of metabolic rates and swimming performance in two latitudinally separated populations of cod, Gadus morhua L.

Abstract: Atlantic cod populations live in a wide thermal range and can differ genetically and physiologically. Thermal sensitivity of metabolic capacity and swimming performance may vary along a latitudinal gradient, to facilitate performance in distinct thermal environments. To evaluate this hypothesis, we compared the thermal sensitivity of performance in two cod stocks from the Northwest Atlantic that differ in their thermal experience: Gulf of St Lawrence (GSL) and Bay of Fundy (BF). We first compared the metabolic, physiological and swimming performance after short-term thermal change to that at the acclimation temperature (7 degrees C) for one stock (GSL), before comparing the performance of the two stocks after short-term thermal change. For cod from GSL, standard metabolism (SMR) increased with temperature, while active metabolism (AMR, measured in the critical swimming tests), EMR (metabolic rate after an exhaustive chase protocol), aerobic scope (AS) and critical swimming speeds (U (crit) and U (b-c)) were lower at 3 degrees C than 7 or 11 degrees C. In contrast, anaerobic swimming (sprint and burst-coasts in U (crit) test) was lower at 11 than 7 or 3 degrees C. Factorial AS (AMR SMR(-1)) decreased as temperature rose. Time to exhaustion (chase protocol) was not influenced by temperature. The two stocks differed little in the thermal sensitivities of metabolism or swimming. GSL cod had a higher SMR than BF cod despite similar AMR and AS. This led factorial AS to be significantly higher for the southern stock. Despite these metabolic differences, cod from the two stocks did not differ in their U (crit) speeds. BF cod were better sprinters at both temperatures. Cod from GSL had a lower aerobic cost of swimming at intermediate speeds than those from BF, particularly at low temperature. Only the activity of cytochrome C oxidase (CCO) in white muscle differed between stocks. No enzymatic correlates were found for swimming capacities, but oxygen consumption was best correlated with CCO activity in the ventricle for both stocks. Overall, the stocks differed in their cost of maintenance, cost of transport and sprint capacity, while maintaining comparable thermal sensitivities.

Comparing microsatellite variation in north‐east Atlantic cod (Gadus morhua L.) to genetic structuring as revealed by the pantophysin (Pan I) locus

Abstract: Variation at seven microsatellite loci was compared with variation observed at Pan I, a single copy nuclear DNA gene coding for pantophysin, in 14 samples of Atlantic cod (Gadus morhua) stretching from Spitsbergen to the North Sea. Population structuring indicated by the two types of markers was concordant and in agreement with the traditional grouping of cod in the study area into three main populations: north-east Arctic cod (NEAC), Norwegian coastal cod (NCC) and North Sea cod (NSC). Microsatellites, however, revealed genetic heterogeneity not only within NCC, as did Pan I, but also within NEAC and NSC, which appeared to be homogenous when analysed for Pan I. Moreover, microsatellites displayed lower levels of differentiation than Pan I between NEAC and two other groups. Differences in the magnitude of differentiation for the two types of markers may be attributable to higher levels of polymorphism and alleged selective neutrality of microsatellites. Isolation by distance was clearly apparent for microsatellites but was less evident for Pan I, indicating that environmentally induced selection appears to shape the patterns of genetic differentiation for this marker. Even though the population structure of north-east Atlantic cod, as revealed by microsatellites and Pan I, appears to be maintained largely by restricted gene flow, selection acting on a recent historical time scale probably contributes to the observed geographic pattern of Pan I frequencies.

Oligopeptide transporter PepT1 in Atlantic cod (Gadus morhua L.): cloning, tissue expression and comparative aspects.

Abstract: A novel full-length cDNA that encodes for the Atlantic cod (Gadus morhua L.) PepT1-type oligopeptide transporter has been cloned. This cDNA (named codPepT1) was 2,838 bp long, with an open reading frame of 2,190 bp encoding a putative protein of 729 amino acids. Comparison of the predicted Atlantic cod PepT1 protein with zebrafish, bird and mammalian orthologs allowed detection of many structural features that are highly conserved among all the vertebrate proteins analysed, including (1) a larger than expected area of hydrophobic amino acids in close proximity to the N terminus; (2) a single highly conserved cAMP/cGMP-dependent protein kinase phosphorylation motif; (3) a large N-glycosylation-rich region within the large extracellular loop; and (4) a conserved and previously undescribed stretch of 8-12 amino acid residues within the large extracellular loop. Expression analysis at the mRNA level indicated that Atlantic cod PepT1 is mainly expressed at intestinal level, but that it is also present in kidney and spleen. Analysis of its regional distribution along the intestinal tract of the fish revealed that PepT1 is ubiquitously expressed in all segments beyond the stomach, including the pyloric caeca, and through the whole midgut. Only in the last segment, which included the hindgut, was there a lower expression. Atlantic cod PepT1, the second teleost fish PepT1-type transporter documented to date, will contribute to the elucidation of the evolutionary and functional relationships among vertebrate peptide transporters. Moreover, it can represent a useful tool for the study of gut functional regionalization, as well as a marker for the analysis of temporal and spatial expression during ontogeny.

Coherence of Atlantic Cod Stock Dynamics in the Northwest Atlantic Ocean

Abstract: The stocks of Atlantic cod Gadus morhua in the Northwest Atlantic Ocean declined in abundance from 1965 to 2003; the declines in spawning stock biomass (SSB) have been temporally coherent. A coherent, sharp increase in SSBs from 1975 to 1985 and a subsequent decrease from 1985 to 1992 are superimposed on the general decline. The coherence suggests that cod stock variability in the Northwest Atlantic Ocean is driven by a common set of causes or that the linkages among the nominal stocks are stronger than was previously thought. The coherent increases in cod SSB from the mid-1970s to 1985 occurred under relatively low fishing mortalities. The declines in SSB beginning in 1985 began during a period of low fishing mortalities. During the 1985-1992 period the declines in Atlantic cod abundance were coupled with greatly reduced growth rates, increased natural mortality rates, and a lack of response to reduced fishing mortality. This suggests that the 1985-1992 decreases were driven by a strong negative...