Showing papers on "Intramolecular force published in 1995"

Structural model for the β-amyloid fibril based on interstrand alignment of an antiparallel-sheet comprising a C-terminal peptide

Abstract: Amyloids are a class of noncrystalline, yet ordered, protein aggregates. A new approach was used to provide the initial structural data on an amyloid fibril—comprising a peptide (β34–42) from the C-terminus of the β-amyloid protein—based on measurement of intramolecular 13C–13C distances and 13C chemical shifts by solid-state 13C NMR and individual amide absorption frequencies by isotope-edited infrared spectroscopy. Intermolecular orientation and alignment within the amyloid sheet was determined by fitting models to observed intermolecular 13C–13C couplings. Although the structural model we present is defined to relatively low resolution, it nevertheless shows a pleated antiparallel β-sheet characterized by a specific intermolecular alignment.

Photoinduced intramolecular electron transfer in a bridged C60(Acceptor)-Aniline(Donor)system. Photophysical properties of the first active fullerene Diad

Abstract: A covalently functionalized fullerene comprising an electron donating aniline group coupled to the fullerene unit by a saturated heterocyclic bridge is shown to undergo a photoinduced intramolecular electron transfer process that causes quenching of the fluorescence of the adduct and strong decrease triplet population in polar solvents. VIS-absorption, fluorescence and phosphorescence at 77 K, triplet-triplet absorption, time resolved fluorescence and redox potentials of the fullerene adduct are presented. Analysis of the solvent dependence of the energetics of the intramolecular electron transfer is given and is in good agreement with the experimental results. 17 refs., 6 figs., 3 tabs.

Luminescent Rhenium/Palladium Square Complex Exhibiting Excited State Intramolecular Electron Transfer Reactivity and Molecular Anion Sensing Characteristics

Abstract: Rigid macrocycles based on cis bridging ligation of transition metals represent an unusual,'-4 and largely new,5 class of compounds having tremendous promise in host-guest, inclusion, and molecular recognition chemistry. Most of the available systems are (1) derived from pt(I1) or Pd(I1) triflate species, (2) tetranuclear with respect to metal content, and therefore, (3) arranged in square or box-like geometries, with metal atoms defining the comers. We report a simple, but potentially very useful, variant and extension of this theme: incorporation of visible-light-addressable, luminescent metal-ligand components within a square assembly. Induction of photoluminescent characteristics is particularly attractive in the context of eventual molecular sensing applications because it suggests an altemative to 'H NMR spectroscopy for detection of guest inclusion. Induction of luminescence also opens up the possibility of electronic excited state reactivity and possible manipulation of reactivity by encapsulated guests. The light-emitting square complex, 1; was prepared by combining the chromophore fac-Re(CO)F1(4,4'-bpy)2 (2)6 (105 mg, 0.170 "01) (4,4'-bpy = 4,4'-bipyridine) with Pd(dppp)(triflate)zId (139 mg, 0.170 m o l ) (dppp = 1,3-(diphenylphosphino)propane) in 50 mL of dry CH2C12. After 12 h of stirring, the pale yellow product was collected as a powder on a glass frit, washed with methylene chloride, and dried under vacuum. The yield was 83%. Elemental analysis data are consistent with the formation of either 1 or a larger assembly with 1:l Re:Pd stoichiometry.' FAB+ mass spectral measurements (m-NBA) yielded intense peaks at m/z = 2871.7 (2871.2 expected for l*H+), 2721.0 (1 triflate) and 2564.9 (1 triflate 4,4'bpy), thereby establishing the tetranuclear metal content of the compound. No peaks for compounds of higher mass (e.g., hexanuclear or octanuclear complexes) were found. FT-IR and 'H NMR measurements (supporting information) yielded additional data supportive of molecular square formation.* Figure 1 shows that the lowest energy transition in the electronic absorption spectrum of 2 is shifted substantially red by formation of the square. The shift is similar to that observed upon ligand protonation in 26 and is consistent with assignment

Enantioselective Intramolecular Cyclopropanations of Allylic and Homoallylic Diazoacetates and Diazoacetamides Using Chiral Dirhodium(II) Carboxamide Catalysts

Abstract: Diazo decomposition of allylic and homoallylic diazoacetates loa-p and 22a-j catalyzed by chiral dirhodium(I1) tetrakis[methyl 2-pyrrolidone-S(S)-carboxylate], Rhz(SS-MEPY)4 (7), and its enantiomer, Rhz(5RMEPY)4 (S), produces the corresponding intramolecular cyclopropanation products l la-p and 23a-j in good to excellent yields and with exceptional enantioselectivity. Higher enantiocontrol is observed with allylic diazoacetates than with their homoallylic counterparts, but allylic diazoacetates are subject to greater variations in enantioselectivities with changes in substitution patterns on the carbon-carbon double bond. For example, the enantioselectivities in the intramolecular cyclopropanations of 3-allcyl/aryl-2(Z)-alken-l-y1 diazoacetates are generally 194%, whereas the cyclizations of the homologous 4-alkyl/aryl-3(Z)-alken1-yl diazoacetates are typically in the range of 70-90% ee. The corresponding 3-alkyYaryl-2(E)-alken-l-y1 and 4-alkyl/aryl-3(E)-alken-l-yl diazoacetates undergo cyclization with slightly lower ee’s (54-85%). Although the Rh@-MEPY)4-catalyzed cyclization of the 2-methallyl diazoacetate 1Oc proceeds with only 7% ee, alternative chiral dirhodium(I1) catalysts, including those with methyl N-acylimidazolidin-2-one-4(S)-carboxylate ligands such as Rh2(4S-MACIM)4 (14) and Rhz(4S-MPAIM)d (E) , may be employed to increase the level of enantiocontrol to 78 and 65%, respectively. Some allylic diazoacetamides also undergo highly enantioselective cyclization to form cyclopropyl lactams as illustrated by the diazo decomposition of N-allyl diazoacetamide (19) in the presence of dirhodium(II) tetrakis[methyl 2-oxazolidinone-4(S)-carboxylate], Rhz(4SMEOXk, to give the 3-azabicyclo[3.1.0]hexan-2-one 20 in 98% ee. The absolute configuration and the level of enantiocontrol in these intramolecular cyclopropanations have been interpreted by a transition state model in which the important determinants are (i) the preferred conformation about the rhodium-carbon bond; (ii) the trajectory of approach of the double bond to the metallocarbene center; and (iii) the orientation of the double bond with respect to the chiral face of the catalyst.

Topological definition of crystal structure: determination of the bonded interactions in solid molecular chlorine

Abstract: The heavier halide molecules form layered crystals indicative of the presence of a specific directed intermolecular interaction. It is shown that this interaction within the crystal can be defined and characterized using the topology of the electron density within the theory of atoms in crystals. It is also shown that its presence in the crystal and the resulting geometry of the layered structure can be predicted in terms of the topology of the Laplacian distribution of an isolated Cl2 molecule, as it relates to the definition of Lewis acid and base sites within the valence shell of an atom. The generality of the definition of both primary and secondary interactions in terms of the topology of the electron density is demonstrated for all types of crystal. The electron density of solid molecular chlorine was determined by fitting the experimental X-ray structure factors and by theoretical calculation and its topology determined. Each Cl atom is found to be linked by bond paths, lines of maximum electron density, to twelve other atoms in the crystal: to four atoms in the same layer parallel to the bc plane, one of which defines the intramolecular bond of the Cl2 group, to six atoms in the four neighbouring molecules lying in the same stack parallel to the b axis and to two atoms in molecules situated in a neighbouring stack.

Effects of the solvent dynamics and vibrational motions in electron transfer

Abstract: Recent theoretical and experimental progress concerning electron transfer (ET) in solution is reviewed by focusing on the mechanism of ET, which occurs much faster than solvation dynamics. Theories of ET in solution are briefly reviewed with particular emphasis placed on the relation to solvent dynamics. Experimental methods to investigate solvent polarization relaxation are described. Ultrafast intramolecular ET, which is found in back ET from the photo-induced charge-transfer state to the ground state, is described concerning highly polar betaines and mixed-valence compounds. Ultrafast intermolecular ET has been observed for the systems of various dyes in electron-donating solvents. A non-exponential process with a significant temperature dependence was observed in aniline. A faster ET with a single exponential decay as fast as 1013 s−1 was observed with no temperature dependence in a system of oxazine 1 in N,N-dimethylaniline. The ET rate constants of excited coumarins in electron-donating solvents dra...

Nitrogenase structure and function : a biochemical-genetic perspective

Abstract: Biological nitrogen fixation is catalyzed by nitrogenase, an enzyme composed of two component proteins called the Fe protein and the MoFe protein. During catalysis, electrons are delivered one at a time from the Fe protein to the MoFe protein in a process involving component-protein association and dissociation and hydrolysis of at least two MgATP for each electron transfer. The Fe protein contains the sites for MgATP binding and hydrolysis, whereas the site for substrate binding and reduction is located on the MoFe protein. Among the important aspects of nitrogenase enzymology discussed here are (a) the structures of the metal centers that participate in electron transfer, (b) the organization of the metalloclusters within the polypeptides and their contributions to substrate binding and electron transfer, (c) the nature of the dynamic interactions between the two component proteins that lead to nucleotide hydrolysis and intermolecular electron transfer, (d) the mechanism by which the multiple electrons necessary for substrate reduction are distributed within the MoFe protein, (e) the nature of the intramolecular electron path within the MoFe protein, and (f) where and how substrate and various inhibitors become bound to the substrate-reduction site. This chapter summarizes biochemical-genetic strategies used to address these questions and discussed them in the context of the recently proposed three-dimensional models for both the Fe protein and MoFe protein from Azotobacter vinelandii.

Excited-state intramolecular charge transfer in donor acceptor-substituted aromatic hydrocarbons and in biaryls The significance of the redox potentials of the D/A subsystems

Abstract: The energy of the charge transfer (CT) emission maximum of a series of dual fluorescent 4-aminobenzonitriles in diethyl ether and acetonitrile does not show a correlation with the redox potentials of the amino (D) and benzonitrile (A) subgroups. It is therefore concluded that these electron donor and acceptor subgroups cannot be treated in the same way as the A and D molecules in exciplexes 1(A−D+). This means that in the intramolecular charge transfer (ICT) state of the aminobenzonitriles, a considerable electronic coupling between the A− and D+ parts exists, in contradiction with the twisted intramolecular charge transfer (TICT) hypothesis. For 9,9′-bianthryl, 10-cyano-9,9′-bianthryl and 10,10′-dicyano-9,9′-bianthryl, photostationary and time-resolved measurements are presented, which show that the influence of the cyano substituents on the ICT reaction in the excited state can be understood by considering the redox potentials of the anthryl groups. The introduction of an additional cyano group in an aminobenzonitrile, however, leads to the disappearance of ICT and dual fluorescence, indicating that the photophysics of these molecules cannot be understood on the basis of the redox potentials of the D and A constituents.

Total Synthesis of the Polyether Antibiotic Lonomycin A (Emericid)

Abstract: The first asymmetric synthesis of the polyether antibiotic lonomycin has been achieved. The skeleton is assembled through the synthesis and union of two subunits comprising the CI-CII and C12-C3o portions of the structure. These fragments were constructed utilizing auxiliary-based asymmetric aldol and acylation reactions to control the absolute stereochemical relationships in the structure. The majority of the 1 ,Zdioxygen relationships in the polyether portion of the molecule were established through a succession of epoxidation reactions which were transformed through intramolecular heterocyclization to establish rings D, E, and F. The major subunits were coupled through a highly diastereoselective aldol reaction to construct the C11 -C12 bond. Spiroketalization followed by selective methylation of the Cll hydroxyl provided the protected ionophore in high yield.

Electron transfer in ruthenium-modified proteins.

Abstract: Photochemical techniques have been used to measure the kinetics of intramolecular electron transfer in Ru(bpy)2(im)(His)2+-modified (bpy = 2,2′-bipyridine; im = imidazole) cytochromec and azurin. A driving-force study with the His33 derivatives of cytochromec indicates that the reorganization energy (γ) for Fe2+→Ru3+ ET reactions is 0.8 eV. Reductions of the ferriheme by either an excited complex,*Ru2+, or a reduced complex, Ru+, are anomalously fast and may involve formation of an electronically excited ferroheme. The distance dependence of Fe2+→Ru3+ and Cu+→Ru3+ electron transfer in 12 different Ru-modified cytochromes and azurins has been analyzed using a tunneling-pathway model. The ET rates in 10 of the 12 systems exhibit an exponential dependence on metal-metal separation (decay constant of 1.06 a−1) that is consistent with predictions of the pathway model.

Accurate Structural Data Demystify B-12 - High-Resolution Solid-State Structure of Aquocobalamin Perchlorate and Structure-Analysis of the Aquocobalamin Ion in Solution

Abstract: Experiments are described to elucidate the structure and solvation of aquocobalamin (vitamin Biza, 1+) in the crystal and in aqueous solution. Aquocobalamin (1+) is the B12 derivative in which a water molecule replaces the axially coordinating organic substituent (methyl or 5'-desoxyadenosyl) at the P-side of the cobalt of the B12 coenzymes. (1) A single-crystal structure analysis of aquocobalamin perchlorate (l'ClO,), using synchrotron radiation in combination with an imaging plate detector, yielded the most accurate structural data ever determined for a B12 molecule. l'C10, crystallizes in the orthorhombic space group P212121, a = 15.042(11) A, b = 23.715(14) A, c = 25.104(12) A, with four 1'CIOi moieties plus about 100 solvent water molecules per unit cell; 22 867 independent and 20 942 significant intensity data were recorded to a nominal resolution of 0.8 A, and refinement against quantities led to a conventional R-value of 0.050 for all 22 867 observations and to a structural model with an average ESD for all carbon-carbon bonds of 0.003 A. In the crystal, the aquocobalamin ion has a very short axial bond between cobalt and the dimethylbenzimidazole (DMB) base of 1.925 (0.002) A, which is rationalized as resulting from the very weak trans axial donor (water). Steric repulsion between the DMB base and the corrin ring induced by this short Co-DMB bond leads to a relatively large "butteffly" deformation with an "upward" fold angle of 18.7 l(0.07)". The relevance of this observation for the "upward conformational deformation" hypothesis for the initiation of Co-C bond homolysis in coenzyme B12 dependent enzymes is discussed. (2) EXAFS spectra were taken from an authentic sample of the aquocobalamin perchlorate crystals used for the X-ray structure analysis, as well as from 1+C104 dissolved in a 1:l mixture of watedethylene glycol. Absorption spectra were recorded at 20 K between 7300 and 8700 eV, and the k3-weighted EXAFS was extracted for a k-value between 2.7 and 14.4 A-l. EXAFS spectra for solid and dissolved l'C10, agree closely, establishing identical cobalt coordination for the aquocobalamin ion in solution and in the solid state. A curve-fitting analysis on the Fourier filtered first-shell data yields a coordination number of 6 and an average distance of 1.90 A for both samples. There is no evidence for a longer Co-N distance. This refutes data published by Sagi and Chance (J. Am. Chem. Soc. 1992, 114, 8061). (3) NMR experiments are described, constituting the first detailed NMR investigations on a Bl2 derivative in H20, including 2D homo- and heteronuclear studies on aquocobalamin chloride (l+Cl-) and assignment of signals due to the exchangeable amide protons of all nitrogens as well a measurements of amide proton exchange rates. The NMR data confirm the occupation of the axial coordination site at the Co(II1) center by water, as well as the occurrence in solution of an intramolecular hydrogen bond to the axially coordinating water molecule, as observed in the crystal structure of l'C10,. However, significant differences of the structure of 1+ in crystals of l'C10, and of 1+ in aqueous solution are indicated from NOE data concerning the time-averaged conformation of the hydrogen-bonding c-acetamide side chain.

Carbon-Nitrogen Bond Cleavage in an .eta.2(N,C)-Pyridine Complex Induced by Intramolecular Metal-to-Ligand Alkyl Migration: Models for Hydrodenitrogenation Catalysis

Abstract: The reaction of the {eta}{sup 2}(N,C)-pyridine complex with LiBEt{sub 3}H affords the C-N bond scission product (2). The reactions of (1) with carbon nucleophiles RLi or RMgX provide the alkyl derivatives [R = Me (3), Et (4), {sup n}Pr (5), {sup n}Bu (6), and CH{sub 2}SiMe{sub 3} (7)]. Kinetic and mechanistic studies of the 3 {yields} 8 rearrangement reveal that methyl migration is strictly intramolecular. The reactions of this model system delineate one process by which heterocyclic C-N bonds are cleaved and offer new insight as to how nitrogen heterocycles may be further degraded after C-N bond cleavage in hydrodenitrogenation catalysis. 74 refs., 7 figs., 5 tabs.

An instanton approach to intramolecular hydrogen exchange: Tunneling splittings in malonaldehyde and the hydrogenoxalate anion

Abstract: Calculations of hydrogen tunneling splittings are reported based on a combination of the instanton approach with quantum‐chemically computed potentials and force fields. The splittings are due to intramolecular hydrogen transfer in symmetric double‐minimum potentials in molecules such as malonaldehyde and the hydrogenoxalate anion. Potential‐energy curves along the tunneling coordinates and harmonic force fields at the stationary points are calculated at the HF/6‐31G** and HF/6‐31+G** level of theory, and combined to yield a complete multidimensional surface. All modes that are displaced between the equilibrium configuration and the transition state are included in the calculation. In the formalism, these modes are linearly coupled to the tunneling mode, the couplings being proportional to the displacements in dimensionless units. These couplings modify the instanton trajectory and subject it to fluctuations. It is argued that within the accuracy of the available potential‐energy surfaces, direct calculat...