D
David Bass
Researcher at Natural History Museum
Publications - 132
Citations - 11919
David Bass is an academic researcher from Natural History Museum. The author has contributed to research in topics: Cercozoa & Phylogenetic tree. The author has an hindex of 45, co-authored 116 publications receiving 9420 citations. Previous affiliations of David Bass include Centre for Environment, Fisheries and Aquaculture Science & American Museum of Natural History.
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Journal ArticleDOI
The revised classification of eukaryotes
Sina M. Adl,Sina M. Adl,Alastair G. B. Simpson,Christopher E. Lane,Julius Lukeš,David Bass,Samuel S. Bowser,Matthew Brown,Fabien Burki,Micah Dunthorn,Vladimír Hampl,Aaron A. Heiss,Mona Hoppenrath,Enrique Lara,Line Le Gall,Denis H. Lynn,Hilary A. McManus,Edward A. D. Mitchell,Sharon E. Mozley‐Stanridge,Laura Wegener Parfrey,Jan Pawlowski,Sonja Rueckert,Laura Shadwick,Conrad L. Schoch,Alexey V. Smirnov,Frederick W. Spiegel +25 more
TL;DR: This revision of the classification of eukaryotes retains an emphasis on the protists and incorporates changes since 2005 that have resolved nodes and branches in phylogenetic trees.
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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
Laure Guillou,Dipankar Bachar,Stéphane Audic,David Bass,Cédric Berney,Lucie Bittner,Christophe Boutte,Gaëtan Burgaud,Colomban de Vargas,Johan Decelle,Javier del Campo,John R. Dolan,Micah Dunthorn,Bente Edvardsen,Maria Holzmann,Wiebe H. C. F. Kooistra,Enrique Lara,Noan Le Bescot,Ramiro Logares,Frédéric Mahé,Ramon Massana,Marina Montresor,Raphael Morard,Fabrice Not,Jan Pawlowski,Ian Probert,Anne Laure Sauvadet,Raffaele Siano,Thorsten Stoeck,Daniel Vaulot,Pascal Zimmermann,Richard Christen +31 more
TL;DR: The presence of both rRNA and rDNA sequences, taking into account introns (crucial for eukaryotic sequences), a normalized eight terms ranked-taxonomy and updates of new GenBank releases were made possible by a long-term collaboration between experts in taxonomy and computer scientists.
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Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
Thorsten Stoeck,David Bass,Markus E. Nebel,Richard Christen,Meredith D. M. Jones,Hans-Werner Breiner,Thomas A. Richards +6 more
TL;DR: It is suggested that current understanding of the ecological complexity of protist communities, genetic diversity, and global species richness are severely limited by the sequence data hitherto available, and long‐tailed rank abundance curves suggest that the 454 sequencing approach provides improved access to rare genotypes.
Journal ArticleDOI
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
Sina M. Adl,David Bass,David Bass,Christopher E. Lane,Julius Lukeš,Julius Lukeš,Conrad L. Schoch,Alexey V. Smirnov,Sabine Agatha,Cédric Berney,Matthew Brown,Fabien Burki,Paco Cárdenas,Ivan Čepička,Lyudmila V. Chistyakova,Javier del Campo,Micah Dunthorn,Micah Dunthorn,Bente Edvardsen,Yana Eglit,Laure Guillou,Vladimír Hampl,Aaron A. Heiss,Mona Hoppenrath,Timothy Y. James,Anna Karnkowska,Sergey Karpov,Sergey Karpov,Eunsoo Kim,Martin Kolisko,Alexander Kudryavtsev,Daniel J. G. Lahr,Enrique Lara,Line Le Gall,Denis H. Lynn,Denis H. Lynn,David G. Mann,Ramon Massana,Edward A. D. Mitchell,Christine Morrow,Jong Soo Park,Jan Pawlowski,Martha J. Powell,Daniel J. Richter,Sonja Rueckert,Lora L. Shadwick,Satoshi Shimano,Frederick W. Spiegel,Guifré Torruella,Noha H. Youssef,Vasily V. Zlatogursky,Vasily V. Zlatogursky,Qianqian Zhang +52 more
TL;DR: It is confirmed that eukaryotes form at least two domains, the loss of monophyly in the Excavata, robust support for the Haptista and Cryptista, and suggested primer sets for DNA sequences from environmental samples that are effective for each clade are provided.
Journal ArticleDOI
CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms
Jan Pawlowski,Stéphane Audic,Sina M. Adl,David Bass,Lassaâd Belbahri,Cédric Berney,Samuel S. Bowser,Ivan Čepička,Johan Decelle,Micah Dunthorn,Anna Maria Fiore-Donno,Gillian H. Gile,Maria Holzmann,Regine Jahn,Miloslav Jirků,Patrick J. Keeling,Martin Kostka,Alexander Kudryavtsev,Enrique Lara,Julius Lukeš,David G. Mann,Edward A. D. Mitchell,Frank Nitsche,Maria Romeralo,Gary W. Saunders,Alastair G. B. Simpson,Alexey V. Smirnov,John L. Spouge,Rowena Stern,Thorsten Stoeck,Jonas Zimmermann,David Schindel,Colomban de Vargas +32 more
TL;DR: A group of protist experts proposes a two-step DNA barcoding approach, comprising a universal eukaryotic pre-barcode followed by group-specific barcodes, to unveil the hidden biodiversity of microbial Eukaryotes.