E
Erik Bongcam-Rudloff
Researcher at Swedish University of Agricultural Sciences
Publications - 135
Citations - 4050
Erik Bongcam-Rudloff is an academic researcher from Swedish University of Agricultural Sciences. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 32, co-authored 129 publications receiving 3524 citations. Previous affiliations of Erik Bongcam-Rudloff include Ludwig Institute for Cancer Research & Uppsala University.
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Journal ArticleDOI
Data integration in the era of omics: current and future challenges.
David Gomez-Cabrero,Imad Abugessaisa,Dieter Maier,Andrew E. Teschendorff,Matthias Merkenschlager,Andreas Gisel,Esteban Ballestar,Erik Bongcam-Rudloff,Ana Conesa,Jesper Tegnér +9 more
TL;DR: A web-survey is used to assess current research projects on data-integration to tap into the views, needs and challenges as currently perceived by parts of the research community.
Journal ArticleDOI
Recommendations for Biomarker Identification and Qualification in Clinical Proteomics
Harald Mischak,Guenter Allmaier,Rolf Apweiler,Teresa K. Attwood,Marc Baumann,Ariela Benigni,Samuel E. Bennett,Rainer Bischoff,Erik Bongcam-Rudloff,Giovambattista Capasso,Joshua J. Coon,Patrick C. D'Haese,Anna F. Dominiczak,Mohammed Dakna,Hassan Dihazi,Jochen H. H. Ehrich,Patricia Fernández-Llama,Danilo Fliser,Jørgen Frøkiær,Jérôme Garin,Mark Girolami,William S. Hancock,Marion Haubitz,Denis F. Hochstrasser,Rury R. Holman,John P. A. Ioannidis,Joachim Jankowski,Bruce A. Julian,Jon B. Klein,Walter Kolch,Theo M. Luider,Ziad A. Massy,William B. Mattes,Franck Molina,Bernard Monsarrat,Jan Novak,Karlheinz Peter,Peter Rossing,Marta Sanchez-Carbayo,Joost P. Schanstra,O. John Semmes,Goce Spasovski,Dan Theodorescu,Visith Thongboonkerd,Raymond Vanholder,Timothy D. Veenstra,Eva M. Weissinger,Tadashi Yamamoto,Antonia Vlahou +48 more
TL;DR: It is asserted that successful studies generally use suitable statistical approaches for biomarker definition and confirm results in independent test sets and a brief set of practical and feasible recommendations are described for investigators to properly identify and qualify proteomic biomarkers, which could also be used as reporting requirements.
Journal ArticleDOI
PDB_REDO : automated re-refinement of X-ray structure models in the PDB
Robbie P. Joosten,Jean Salzemann,V. Bloch,Heinz Stockinger,A.-C. Berglund,C. Blanchet,Erik Bongcam-Rudloff,Christophe Combet,A.L. Da Costa,Gilbert Deléage,M. Diarena,Roberto Fabbretti,G. Fettahi,Volker Flegel,Andreas Gisel,Vinod Kasam,T. Kervinen,Eija Korpelainen,K. Mattila,Marco Pagni,Matthieu Reichstadt,Vincent Breton,Ian J. Tickle,Gert Vriend +23 more
TL;DR: The majority of previously deposited X-ray structures can be improved by applying current refinement methods, and these methods can be applied to improve the structure itself.
Journal ArticleDOI
Implementation of proteomic biomarkers: making it work
Harald Mischak,John P. A. Ioannidis,Àngel Argilés,Teresa K. Attwood,Erik Bongcam-Rudloff,Erik Bongcam-Rudloff,Mark Broenstrup,Aristidis Charonis,George P. Chrousos,Christian Delles,Anna F. Dominiczak,Tomasz Dylag,Jochen H. H. Ehrich,Jesús Egido,Peter Findeisen,Joachim Jankowski,Robert W. Johnson,Bruce A. Julien,Tim O. Lankisch,Hing Y. Leung,David M. Maahs,Fulvio Magni,Michael P. Manns,Efthymios Manolis,Gert Mayer,Gerarda Navis,Jan Novak,Alberto Ortiz,Frederik Persson,Karlheinz Peter,Hans H. Riese,Peter Rossing,Naveed Sattar,Goce Spasovski,Visith Thongboonkerd,Raymond Vanholder,Joost P. Schanstra,Antonia Vlahou +37 more
TL;DR: In this article, the authors propose an implementation roadmap for proteomic biomarkers, focusing on hurdles downstream of biomarker verification, and describe major obstacles and possible solutions to ease valid biomarker implementation.
Journal ArticleDOI
Comprehensive human urine standards for comparability and standardization in clinical proteome analysis
Harald Mischak,Walter Kolch,Michalis Aivaliotis,David Bouyssié,Magali Court,Hassan Dihazi,Gry H. Dihazi,Julia Franke,Jérôme Garin,Anne Gonzalez de Peredo,Alexander Iphöfer,Lothar Jänsch,Chrystelle Lacroix,Manousos Makridakis,Christophe Masselon,Jochen Metzger,Bernard Monsarrat,Michal Mrug,Martin Norling,Jan Novak,Andreas Pich,Andrew R. Pitt,Erik Bongcam-Rudloff,Justyna Siwy,Hitoshi Suzuki,Visith Thongboonkerd,Li-Shun Wang,Jerome Zoidakis,Petra Zürbig,Joost P. Schanstra,Antonia Vlahou +30 more
TL;DR: The purpose of this study is the development of a well‐characterized “real life” sample that can be used as reference standard in urine clinical proteomics studies.