M
M Mashreghi-Mohammadi
Researcher at Wellcome Trust Sanger Institute
Publications - 7
Citations - 5917
M Mashreghi-Mohammadi is an academic researcher from Wellcome Trust Sanger Institute. The author has contributed to research in topics: Human genome & Sequence analysis. The author has an hindex of 7, co-authored 7 publications receiving 5022 citations.
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Journal ArticleDOI
The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe,Matthew D. Clark,Carlos Torroja,Carlos Torroja,James Torrance,Camille Berthelot,Matthieu Muffato,John E. Collins,Sean Humphray,Karen McLaren,Lucy Matthews,Stuart McLaren,Ian M Sealy,Mario Caccamo,Carol Churcher,Carol Scott,Jeffrey C. Barrett,Romke Koch,Gerd Jörg Rauch,Simon D. M. White,William Chow,Britt Kilian,Leonor T. Quintais,José Afonso Guerra-Assunção,Yi Zhou,Yong Gu,Jennifer Yen,Jan Hinnerk Vogel,Tina Eyre,Seth Redmond,Ruby Banerjee,Jianxiang Chi,Beiyuan Fu,Elizabeth Langley,Sean Maguire,Gavin K. Laird,D. M. Lloyd,Emma J. Kenyon,Sarah Donaldson,Harminder Sehra,Jeff Almeida-King,Jane E. Loveland,Stephen J. Trevanion,Matthew Jones,Michael A. Quail,Dave Willey,Adrienne Hunt,John Burton,Sarah Sims,Kirsten McLay,Bob Plumb,J. C. Davis,Chris Clee,Karen Oliver,Richard M. Clark,Clare Riddle,David Eliott,Glen Threadgold,Glenn Harden,Darren Ware,Beverly Mortimer,Giselle Kerry,Paul Heath,Benjamin Phillimore,Alan Tracey,N Corby,Matthew Dunn,Christopher M. Johnson,Jonathan Wood,Susan J. Clark,Sarah Pelan,Guy Griffiths,Michelle Smith,Rebecca Glithero,Philip Howden,Nick Barker,Christopher Stevens,Joanna Harley,Karen Holt,Georgios Panagiotidis,J Lovell,Helen Beasley,Carl Henderson,Daria Gordon,Katherine Auger,Debbie E. Wright,Joanna Collins,Claire Raisen,Lauren Dyer,Kenric Leung,Lauren Robertson,Kirsty Ambridge,Daniel Leongamornlert,Sarah McGuire,Ruth Gilderthorp,C Griffiths,Deepa Manthravadi,Sarah Nichol,Gary L A Barker,S. Whitehead,Michael Kay,Jacqueline Brown,Clare Murnane,Emma Gray,Matthew Humphries,N Sycamore,Darren Barker,David S. Saunders,J. M. Wallis,A K Babbage,S Hammond,M Mashreghi-Mohammadi,Lucy Barr,Sancha Martin,Paul Wray,Andrew D. Ellington,Nicholas Matthews,Matthew Ellwood,Rebecca Woodmansey,Graham Clark,James D. Cooper,A Tromans,Darren Grafham,C. D. Skuce,Richard Pandian,Robert Andrews,Elliot Harrison,A M Kimberley,J Garnett,Nigel Fosker,Rebekah Hall,P Garner,Daniel P. Kelly,Christine P. Bird,Sophie Palmer,Ines Gehring,Andrea Berger,Christopher M. Dooley,Christopher M. Dooley,Zübeyde Ersan-Ürün,Cigdem Eser,Horst Geiger,Maria Geisler,Lena Karotki,Anette Kirn,Judith Konantz,Martina Konantz,Martina Oberländer,Silke Rudolph-Geiger,Mathias Teucke,Kazutoyo Osoegawa,Baoli Zhu,Amanda Rapp,Sara Widaa,Cordelia Langford,Fengtang Yang,Nigel P. Carter,Jennifer Harrow,Zemin Ning,Javier Herrero,Steve Searle,Anton J. Enright,Robert Geisler,Robert Geisler,Ronald H.A. Plasterk,Charles Lee,Monte Westerfield,Pieter J. de Jong,Leonard I. Zon,John H. Postlethwait,Christiane Nüsslein-Volhard,Tim Hubbard,Hugues Roest Crollius,Jane Rogers,Derek L. Stemple +174 more
TL;DR: A high-quality sequence assembly of the zebrafish genome is generated, made up of an overlapping set of completely sequenced large-insert clones that were ordered and oriented using a high-resolution high-density meiotic map, providing a clearer understanding of key genomic features such as a unique repeat content, a scarcity of pseudogenes, an enrichment of zebra fish-specific genes on chromosome 4 and chromosomal regions that influence sex determination.
Journal ArticleDOI
The DNA sequence of human chromosome 22
Ian Dunham,Nobuyoshi Shimizu,Bruce A. Roe,S. Chissoe,Adrienne Hunt,Joanna Collins,Richard Bruskiewich,David Beare,Michele Clamp,Luc J. Smink,R Ainscough,J P Almeida,A K Babbage,C L Bagguley,J Bailey,K F Barlow,K Bates,O. Beasley,Christine P. Bird,S. Blakey,Anne Bridgeman,D. Buck,J. Burgess,J. Burgess,W Burrill,John Burton,C Carder,Nigel P. Carter,Yuan Chen,Graeme T Clark,S. M. Clegg,V. Cobley,Charlotte G. Cole,R. E. Collier,R. Connor,D. Conroy,N Corby,G. J. Coville,Antony V. Cox,J. C. Davis,J. C. Davis,Elisabeth Dawson,Pawandeep Dhami,C. Dockree,S. J. Dodsworth,Richard Durbin,Andrew D. Ellington,Kathryn L. Evans,J. M. Fey,K. Fleming,Lisa French,A. A. Garner,James G. R. Gilbert,Melanie E. Goward,Darren Grafham,Mark Griffiths,C. Hall,C. Hall,Rebekah Hall,G. Hall-Tamlyn,R. W. Heathcott,R. W. Heathcott,Shuk-Mei Ho,S. Holmes,Sarah E. Hunt,Matthew Jones,J K Kershaw,A M Kimberley,A. King,Gavin K. Laird,Cordelia Langford,Margaret A. Leversha,Christine Lloyd,D. M. Lloyd,I. D. Martyn,M Mashreghi-Mohammadi,Lucy Matthews,O. T. McCann,Joseph L. McClay,Stuart McLaren,Amanda McMurray,Sarah Milne,B. J. Mortimore,C. Odell,R. Pavitt,A. V. Pearce,D. Pearson,Benjamin Phillimore,Sam Phillips,Robert W. Plumb,H. Ramsay,Y. Ramsey,Lesley J. Rogers,Mark T. Ross,Carol Scott,Harminder Sehra,C. D. Skuce,S. Smalley,Michelle Smith,Carol Soderlund,L. Spragon,Charles A. Steward,John Sulston,R. M. Swann,M. Vaudin,M. Vaudin,Melanie M. Wall,J. M. Wallis,M. N. Whiteley,M. N. Whiteley,Dave Willey,L. Williams,Scott M. Williams,H. Williamson,H. Williamson,T. E. Wilmer,Laurens G. Wilming,Charmain L. Wright,Tim Hubbard,David R. Bentley,Stephan Beck,Jane Rogers,Shinsei Minoshima,Kazuhiko Kawasaki,Takashi Sasaki,Shuichi Asakawa,Jun Kudoh,Ai Shintani,Kazunori Shibuya,Y. Yoshizaki,Noriaki Aoki,Susumu Mitsuyama,Feng Chen,L. Chu,Judy S. Crabtree,Stéphane Deschamps,A. Do,T. Do,Angela Dorman,F. Fang,Y. Fu,P. Hu,Axin Hua,Steve Kenton,Hongshing Lai,H. I. Lao,Jennifer Lewis,S. Lewis,Shaoping Lin,P. Loh,Eda Malaj,T. Nguyen,Huaqin Pan,S. Phan,S. Qi,Y. Qian,L. Ray,Q. Ren,S. Shaull,D. Sloan,L. Song,Q. Wang,Yuhang Wang,Z. Wang,Jim White,D. Willingham,H. Wu,Ziyun Yao,M. Zhan,Genwei Zhang,Joseph A. Murray,N. Miller,Patrick Minx,Robert S. Fulton,David W. Johnson,G. Bemis,David Bentley,H. Bradshaw,S. Bourne,Matt Cordes,Zijin Du,Lucinda Fulton,D. Goela,Tina Graves,J. Hawkins,K. Hinds,K. Kemp,Phil Latreille,Dan Layman,Philip Ozersky,Tracy Rohlfing,Paul Scheet,C. Walker,A. Wamsley,Patricia Wohldmann,Kymberlie H. Pepin,Joanne O. Nelson,Ian F Korf,Joseph A. Bedell,LaDeana W. Hillier,Elaine R. Mardis,Robert H. Waterston,Richard K. Wilson,Beverly S. Emanuel,Tamim H. Shaikh,Hiroki Kurahashi,Sulagna C. Saitta,M. L. Budarf,Heather E. McDermid,Alexander Johnson,A. C.C. Wong,Bernice E. Morrow,Lisa Edelmann,U. J. Kim,Hiroaki Shizuya,Melvin I. Simon,Jan P. Dumanski,Myriam Peyrard,Darek Kedra,Eyal Seroussi,Ingegerd Fransson,I. Tapia,Carl E.G. Bruder,K. P. O'Brien +223 more
TL;DR: The sequence of the euchromatic part of human chromosome 22 is reported, which consists of 12 contiguous segments spanning 33.4 megabases, contains at least 545 genes and 134 pseudogenes, and provides the first view of the complex chromosomal landscapes that will be found in the rest of the genome.
Journal ArticleDOI
DNA sequence and analysis of human chromosome 9
Andrew J. Mungall,Sophie Palmer,Sarah Sims,C A Edwards,Jennifer L. Ashurst,Laurens G. Wilming,Matthew Jones,Roger Horton,Sarah E. Hunt,Carol Scott,James G. R. Gilbert,Michele Clamp,Graeme Bethel,Sarah Milne,R Ainscough,J P Almeida,K D Ambrose,T D Andrews,R I S Ashwell,A K Babbage,C L Bagguley,J Bailey,Ruby Banerjee,Darren Barker,K F Barlow,K Bates,David Beare,Helen Beasley,O. Beasley,Christine P. Bird,S. Blakey,S Bray-Allen,J Brook,A J Brown,J Y Brown,D C Burford,W Burrill,John Burton,C Carder,Nigel P. Carter,J C Chapman,S Y Clark,Graeme T Clark,C M Clee,S. M. Clegg,V. Cobley,R. E. Collier,Joanna Collins,L K Colman,N Corby,G. J. Coville,K M Culley,Pawandeep Dhami,Jim Davies,Matthew Dunn,M Earthrowl,A E Ellington,K A Evans,L M Faulkner,Matthew D. Francis,Adam Frankish,J Frankland,Lisa French,P Garner,J Garnett,Mohammed J. R. Ghori,L M Gilby,Christopher J. Gillson,Rebecca Glithero,Darren Grafham,M Grant,Susan M. Gribble,C Griffiths,Mark Griffiths,Rebekah Hall,K S Halls,S Hammond,Joanna Harley,E. Hart,Paul Heath,R Heathcott,S. Holmes,Philip Howden,Kevin L. Howe,Gareth R. Howell,Elizabeth J. Huckle,Sean Humphray,Matthew Humphries,Adrienne Hunt,Christopher M. Johnson,A Joy,M. Kay,Stephen Keenan,A M Kimberley,A. King,Gavin K. Laird,Cordelia Langford,S Lawlor,Daniel Leongamornlert,Margaret A. Leversha,Christine Lloyd,D. M. Lloyd,Jane E. Loveland,J Lovell,Sancha Martin,M Mashreghi-Mohammadi,Gareth Maslen,Lucy Matthews,O. T. McCann,S J McLaren,Kirsten McLay,Amanda McMurray,M. J F Moore,James C. Mullikin,David Niblett,T Nickerson,K L Novik,Karen Oliver,E K Overton-Larty,Anne Parker,R Patel,A. V. Pearce,A I Peck,Benjamin Phillimore,Sam Phillips,Robert W. Plumb,K M Porter,Y. Ramsey,S A Ranby,Catherine M. Rice,Mark T. Ross,S. Searle,Harminder Sehra,E Sheridan,C. D. Skuce,Sarah E. Smith,Michelle Smith,L Spraggon,S. Squares,Charles A. Steward,N Sycamore,G Tamlyn-Hall,J Tester,A J Theaker,Duncan W. Thomas,A Thorpe,Alan Tracey,A Tromans,B Tubby,Melanie M. Wall,J. M. Wallis,Anthony P. West,S S White,S. Whitehead,H Whittaker,A Wild,Dave Willey,T. E. Wilmer,Jonathan Wood,Paul Wray,J C Wyatt,L Young,R M Younger,David R. Bentley,Alan Coulson,Richard Durbin,Tim Hubbard,John Sulston,Ian Dunham,Jane Rogers,Stephan Beck +170 more
TL;DR: Analysis of the sequence reveals many intra- and interchromosomal duplications, including segmental duplications adjacent to both the centromere and the large heterochromatic block, and detects recently duplicated genes that exhibit different rates of sequence divergence, presumably reflecting natural selection.
Journal ArticleDOI
The DNA sequence and comparative analysis of human chromosome 20.
Panos Deloukas,M Earthrowl,Darren Grafham,Marc Rubenfield,Lisa French,Charles A. Steward,Sarah Sims,Matthew Jones,S. Searle,Carol Scott,Kerstin Howe,Sarah E. Hunt,T D Andrews,James G. R. Gilbert,David Swarbreck,Jennifer L. Ashurst,A Taylor,J Battles,Christine P. Bird,R Ainscough,J P Almeida,R I S Ashwell,K D Ambrose,A K Babbage,C L Bagguley,J Bailey,Ruby Banerjee,K Bates,Helen Beasley,S Bray-Allen,A J Brown,J Y Brown,D C Burford,W Burrill,John Burton,Patrick Cahill,D Camire,Nigel P. Carter,J C Chapman,S Y Clark,G Clarke,C M Clee,S. M. Clegg,N Corby,Alan Coulson,Pawandeep Dhami,I Dutta,Matthew Dunn,L M Faulkner,Adam Frankish,J Frankland,P Garner,J Garnett,Susan M. Gribble,C Griffiths,Russell J. Grocock,Erik Gustafson,S Hammond,Joanna Harley,E. Hart,Paul Heath,T P Ho,B Hopkins,J Horne,Philip Howden,Elizabeth J. Huckle,C Hynds,Chris Johnson,David W. Johnson,A Kana,M. Kay,A M Kimberley,J K Kershaw,M Kokkinaki,Gavin K. Laird,S Lawlor,H M Lee,Daniel Leongamornlert,G Laird,Christine Lloyd,D. M. Lloyd,Jane E. Loveland,J Lovell,Stuart McLaren,Kirsten McLay,Amanda McMurray,M Mashreghi-Mohammadi,Lucy Matthews,Sarah Milne,T Nickerson,M Nguyen,E K Overton-Larty,Sophie Palmer,A. V. Pearce,A I Peck,Sarah Pelan,Benjamin Phillimore,K M Porter,Catherine M. Rice,A Rogosin,Mark T. Ross,Theologia Sarafidou,Harminder Sehra,Ratna Shownkeen,C. D. Skuce,Michelle Smith,L Standring,N Sycamore,J Tester,A Thorpe,W Torcasso,Alan Tracey,A Tromans,J Tsolas,Melanie M. Wall,J Walsh,H Wang,Keith Weinstock,Anthony P. West,David Willey,S. Whitehead,Laurens G. Wilming,Paul Wray,L Young,Yuan Chen,Ruth C. Lovering,Nicholas K. Moschonas,Reiner Siebert,Kim Fechtel,David Bentley,Richard Durbin,Tim Hubbard,Lynn Doucette-Stamm,Stephan Beck,Douglas Smith,Jane Rogers +135 more
TL;DR: Comparative analysis of the sequence of chromosome 20 to whole-genome shotgun-sequence data of two other vertebrates provides an independent measure of the efficiency of gene annotation, and indicates that this analysis may account for more than 95% of all coding exons and almost all genes.
Journal ArticleDOI
The DNA sequence and biological annotation of human chromosome 1
Simon G. Gregory,Simon G. Gregory,K F Barlow,Kirsten McLay,Rajinder Kaul,David Swarbreck,Andrew Dunham,Carol Scott,Kevin L. Howe,Kathryn Woodfine,Chris C. A. Spencer,Matthew Jones,Christopher J. Gillson,S. Searle,Yi Zhou,Felix Kokocinski,L McDonald,R Evans,Katharine A. Phillips,A Atkinson,R Cooper,C Jones,R. E. Hall,T D Andrews,Christine Lloyd,R Ainscough,J P Almeida,K D Ambrose,F Anderson,R. W. Andrew,R I S Ashwell,K Aubin,A K Babbage,C L Bagguley,J Bailey,Helen Beasley,Graeme Bethel,Christine P. Bird,S Bray-Allen,J Y Brown,A J Brown,D. Buckley,John Burton,Jacqueline M. Bye,C Carder,J C Chapman,S Y Clark,G Clarke,C M Clee,V. Cobley,R. E. Collier,N Corby,G. J. Coville,Jim Davies,Rebecca Deadman,Matthew Dunn,M Earthrowl,A. G. Ellington,H Errington,Adam Frankish,J Frankland,Lisa French,P Garner,J Garnett,M. R J Ghori,Richard Gibson,L M Gilby,Will Gillett,Rebecca Glithero,Darren Grafham,C Griffiths,Sam Griffiths-Jones,Russell J. Grocock,S Hammond,Elliot Harrison,E. Hart,Eric Haugen,Paul Heath,S. Holmes,Kathryn E. Holt,Philip Howden,Adrienne Hunt,Sarah E. Hunt,G Hunter,J Isherwood,R. James,Chris Johnson,D. Johnson,A Joy,M. Kay,J K Kershaw,M. Kibukawa,A M Kimberley,A. King,Andrew J Knights,Heena V. Lad,Gavin K. Laird,S Lawlor,Daniel Leongamornlert,D. M. Lloyd,Jane E. Loveland,J Lovell,Michael J. Lush,Rachel Lyne,Sancha Martin,M Mashreghi-Mohammadi,Lucy Matthews,Nicholas Matthews,Stuart McLaren,Sarah Milne,S. Mistry,M. J F Moore,T Nickerson,C. Odell,Karen Oliver,A. Palmeiri,Sophie Palmer,Anne Parker,D. Patel,A. V. Pearce,A I Peck,Sarah Pelan,Karen A. Phelps,Benjamin Phillimore,Robert W. Plumb,Jeena Rajan,Charles F. Raymond,Greg W. Rouse,Channakhone Saenphimmachak,Harminder Sehra,E Sheridan,Ratna Shownkeen,Sarah Sims,C. D. Skuce,Michelle Smith,Charles A. Steward,Sankaran Subramanian,N Sycamore,Alan Tracey,A Tromans,Z. Van Helmond,Melanie M. Wall,J. M. Wallis,Simon D. M. White,S. Whitehead,Jane E. Wilkinson,David Willey,H. Williams,Laurens G. Wilming,Paul Wray,Z. Wu,Alan Coulson,M. Vaudin,John Sulston,Richard Durbin,Tim Hubbard,Richard Wooster,Ian Dunham,Nigel P. Carter,G. McVean,Mark T. Ross,Jennifer Harrow,Maynard V. Olson,Stephan Beck,Jane Rogers,David R. Bentley +165 more
TL;DR: The finished sequence and biological annotation of human chromosome 1 is reported, which reveals patterns of sequence variation that reveal signals of recent selection in specific genes that may contribute to human fitness, and also in regions where no function is evident.