H
Hisashi Endo
Researcher at Kyoto University
Publications - 48
Citations - 1861
Hisashi Endo is an academic researcher from Kyoto University. The author has contributed to research in topics: Phytoplankton & Genome. The author has an hindex of 12, co-authored 40 publications receiving 722 citations. Previous affiliations of Hisashi Endo include Hokkaido University.
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Journal ArticleDOI
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold.
Takuya Aramaki,Romain Blanc-Mathieu,Hisashi Endo,Koichi Ohkubo,Koichi Ohkubo,Minoru Kanehisa,Susumu Goto,Hiroyuki Ogata +7 more
TL;DR: KofamKOALA is a web server to assign KEGG Orthologs (KOs) to protein sequences by homology search against a database of profile hidden Markov models (KOfam) with pre-computed adaptive score thresholds.
Posted ContentDOI
KofamKOALA: KEGG ortholog assignment based on profile HMM and adaptive score threshold
Takuya Aramaki,Romain Blanc-Mathieu,Hisashi Endo,Koichi Ohkubo,Koichi Ohkubo,Minoru Kanehisa,Susumu Goto,Hiroyuki Ogata +7 more
TL;DR: KofamKOALA is a web server to assign KEGG Orthologs (KOs) to protein sequences by homology search against a database of profile hidden Markov models (KOfam) with pre-computed adaptive score thresholds.
Journal ArticleDOI
Global Trends in Marine Plankton Diversity across Kingdoms of Life.
Federico Matias Ibarbalz,Nicolas Henry,Manoela C. Brandão,Séverine Martini,Greta Busseni,Hannah Byrne,Luis Pedro Coelho,Hisashi Endo,Josep M. Gasol,Ann C. Gregory,Frédéric Mahé,Janaina Rigonato,Marta Royo-Llonch,Guillem Salazar,Isabel Sanz-Sáez,Eleonora Scalco,Dodji Soviadan,Ahmed A. Zayed,Adriana Zingone,Karine Labadie,Joannie Ferland,Claudie Marec,Stefanie Kandels,Marc Picheral,Céline Dimier,Julie Poulain,Sergey Pisarev,Margaux Carmichael,Stephane Pesant,Marcel Babin,Emmanuel Boss,Daniele Iudicone,Olivier Jaillon,Silvia G. Acinas,Hiroyuki Ogata,Eric Pelletier,Lars Stemmann,Matthew B. Sullivan,Shinichi Sunagawa,Laurent Bopp,Colomban de Vargas,Lee Karp-Boss,Patrick Wincker,Fabien Lombard,Chris Bowler,Lucie Zinger,Peer Bork,Guy Cochrane,Mick Follows,Gabriel Gorsky,Nigel Grimsley,Lionel Guidi,Pascal Hingamp,Eric Karsenti,Fabrice Not,Nicole J. Poulton,Jeroen Raes,Christian Sardet,Sabrina Speich +58 more
TL;DR: This work investigates the latitudinal gradients and global predictors of plankton diversity across archaea, bacteria, eukaryotes, and major virus clades using both molecular and imaging data from Tara Oceans to show a decline of diversity for most planktonic groups toward the poles.
Journal ArticleDOI
Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions
Hisashi Endo,Romain Blanc-Mathieu,Romain Blanc-Mathieu,Yanze Li,Guillem Salazar,Nicolas Henry,Nicolas Henry,Karine Labadie,Colomban de Vargas,Colomban de Vargas,Matthew B. Sullivan,Chris Bowler,Patrick Wincker,Lee Karp-Boss,Shinichi Sunagawa,Hiroyuki Ogata +15 more
TL;DR: A heterogeneous distribution of NCLDVs across oceans, and a higher proportion of unique NclDVs in the polar biomes, is revealed, which suggests a potential role of vertical transport in structuring mesopelagic NCLdV communities.
Journal ArticleDOI
Effects of CO2 and iron availability on phytoplankton and eubacterial community compositions in the northwest subarctic Pacific
TL;DR: Results indicate that the progression of ocean acidification can alter the biogeochemical processes in the study area and suggest that increases in CO2 level could affect not only the community composition of phytoplankton but also that of eubacteria.