J
Jeremy A. Dodsworth
Researcher at California State University, San Bernardino
Publications - 22
Citations - 1455
Jeremy A. Dodsworth is an academic researcher from California State University, San Bernardino. The author has contributed to research in topics: Genome & Metagenomics. The author has an hindex of 8, co-authored 22 publications receiving 920 citations. Previous affiliations of Jeremy A. Dodsworth include University of Nevada, Reno & California State University.
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Journal ArticleDOI
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Robert M. Bowers,Nikos C. Kyrpides,Ramunas Stepanauskas,Miranda Harmon-Smith,Devin F. R. Doud,T. B. K. Reddy,Frederik Schulz,Jessica K. Jarett,Adam R. Rivers,Adam R. Rivers,Emiley A. Eloe-Fadrosh,Susannah G. Tringe,Susannah G. Tringe,Natalia Ivanova,Alex Copeland,Alicia Clum,Eric D. Becraft,Rex R. Malmstrom,Bruce W. Birren,Mircea Podar,Peer Bork,George M. Weinstock,George M. Garrity,Jeremy A. Dodsworth,Shibu Yooseph,Granger G. Sutton,Frank Oliver Gloeckner,Jack A. Gilbert,William C. Nelson,Steven J. Hallam,Sean P. Jungbluth,Sean P. Jungbluth,Thijs J. G. Ettema,Scott Tighe,Konstantinos T. Konstantinidis,Wen Tso Liu,Brett J. Baker,Thomas Rattei,Jonathan A. Eisen,Brian P. Hedlund,Katherine D. McMahon,Noah Fierer,Rob Knight,Robert D. Finn,Guy Cochrane,Ilene Karsch-Mizrachi,Gene W. Tyson,Christian Rinke,Alla Lapidus,Folker Meyer,Pelin Yilmaz,Donovan H. Parks,A. M. Eren,Lynn M. Schriml,Jillian F. Banfield,Philip Hugenholtz,Tanja Woyke +56 more
TL;DR: Two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences are presented, including the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum information about a Metagenome-Assembled Genomes (MIMAG), including estimates of genome completeness and contamination.
Insights into the phylogeny and coding potential of microbial dark matter. Rinke et al 2013 main article
Christian Rinke,Patrick Schwientek,Alexander Sczyrba,Natalia Ivanova,Iain Anderson,Jan-Fang Cheng,Aaron E. Darling,Stephanie Malfatti,Brandon K. Swan,Esther A. Gies,Jeremy A. Dodsworth,Brian P. Hedlund,George Tsiamis,Stefan M. Sievert,Wen Tso Liu,Jonathan A. Eisen,Steven J. Hallam,Nikos Kyrpides,Ramunas Stepanauskas,Edward M. Rubin,Philip Hugenholtz,Tanja Woyke +21 more
TL;DR: In this article, single-cell genomics was applied to target and sequence 201"uncultivated archaeal and bacterial cells from nine diverse habitats belonging to 29" major mostly uncharted branches of the tree of life, so-called microbial dark matter.
Journal ArticleDOI
Uncultivated thermophiles: current status and spotlight on 'Aigarchaeota'.
Brian P. Hedlund,Senthil K. Murugapiran,Timothy W Alba,Asaf Levy,Jeremy A. Dodsworth,Gisele Braga Goertz,Natalia Ivanova,Tanja Woyke +7 more
TL;DR: Meta-analysis of cultivation-independent sequence data shows that geothermal systems host an abundance of novel organisms, representing a vast unexplored phylogenetic and functional diversity among yet-uncultivated thermophiles.
Journal ArticleDOI
Localized high abundance of Marine Group II archaea in the subtropical Pearl River Estuary: implications for their niche adaptation
Wei Xie,Haiwei Luo,Senthil K. Murugapiran,Jeremy A. Dodsworth,Songze Chen,Ying Sun,Brian P. Hedlund,Peng Wang,Huaying Fang,Minghua Deng,Chuanlun Zhang +10 more
TL;DR: Their association with heterotrophs, preference for particles and resourceful metabolic traits indicate MGII might play a significant role in metabolising organic matters in the PRE and other temperate estuarine systems.
Journal ArticleDOI
The changing landscape of microbial biodiversity exploration and its implications for systematics.
TL;DR: This work proposes to expand the definition of the Candidatus taxonomy to include taxa, from the phylum level to the species level, that are described genomically, particularly when genomic work is coupled with advanced molecular ecology approaches to probe metabolic functions in situ.