J
Jessica Antosiewicz-Bourget
Researcher at Morgridge Institute for Research
Publications - 6
Citations - 4245
Jessica Antosiewicz-Bourget is an academic researcher from Morgridge Institute for Research. The author has contributed to research in topics: Induced pluripotent stem cell & Epigenomics. The author has an hindex of 5, co-authored 6 publications receiving 3682 citations.
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Journal ArticleDOI
Chromatin architecture reorganization during stem cell differentiation
Jesse R. Dixon,Inkyung Jung,Siddarth Selvaraj,Yin Shen,Jessica Antosiewicz-Bourget,Ah Young Lee,Zhen Ye,Audrey Kim,Nisha Rajagopal,Wei Xie,Yarui Diao,Jing Liang,Huimin Zhao,Victor V. Lobanenkov,Joseph R. Ecker,James A. Thomson,Bing Ren +16 more
TL;DR: Mapping genome-wide chromatin interactions in human embryonic stem cells and four human ES-cell-derived lineages reveals extensive chromatin reorganization during lineage specification, providing a global view of chromatin dynamics and a resource for studying long-range control of gene expression in distinct human cell lineages.
Journal ArticleDOI
Chemically defined conditions for human iPSC derivation and culture
Guokai Chen,Daniel R. Gulbranson,Daniel R. Gulbranson,Zhonggang Hou,Zhonggang Hou,Jennifer M. Bolin,Victor Ruotti,Mitchell D. Probasco,Kimberly Smuga-Otto,Sara E. Howden,Sara E. Howden,Nicole R. Diol,Nicole R. Diol,Nicholas E. Propson,Nicholas E. Propson,Ryan J. Wagner,Ryan J. Wagner,Garrett O. Lee,Garrett O. Lee,Jessica Antosiewicz-Bourget,Joyce M.C. Teng,James A. Thomson +21 more
TL;DR: A cell culture system in which all protein reagents for liquid media, attachment surfaces and splitting are chemically defined is formed, and improved derivation efficiencies of vector-free human iPSCs with an episomal approach are demonstrated.
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Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
R. David Hawkins,Gary C. Hon,Leonard Lee,Que-Minh Ngo,Ryan Lister,Mattia Pelizzola,Lee Edsall,Samantha Kuan,Ying Luu,Sarit Klugman,Jessica Antosiewicz-Bourget,Zhen Ye,Celso A. Espinoza,Saurabh Agarwahl,Li Shen,Victor Ruotti,Victor Ruotti,Wei Wang,Ron Stewart,Ron Stewart,James A. Thomson,Joseph R. Ecker,Bing Ren,Bing Ren +23 more
TL;DR: By comparing the chromatin-modification profiles and DNA methylomes in hESCs and primary fibroblasts, it is found that nearly one-third of the genome differs in chromatin structure.
Journal ArticleDOI
Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells
Wei Xie,Matthew D. Schultz,Ryan Lister,Zhonggang Hou,Nisha Rajagopal,Pradipta R. Ray,John W. Whitaker,Shulan Tian,R. David Hawkins,Danny Leung,Hongbo Yang,Tao Wang,Ah Young Lee,Scott Swanson,Jiuchun Zhang,Jiuchun Zhang,Yun Zhu,Audrey Kim,Joseph R. Nery,Mark A. Urich,Samantha Kuan,Chia-An Yen,Sarit Klugman,Pengzhi Yu,Kran Suknuntha,Nicholas E. Propson,Huaming Chen,Lee Edsall,Ulrich Wagner,Yan Li,Zhen Ye,Ashwinikumar Kulkarni,Zhenyu Xuan,Wen Yu Chung,Neil C. Chi,Jessica Antosiewicz-Bourget,Igor I. Slukvin,Ron Stewart,Michael Q. Zhang,Michael Q. Zhang,Wei Wang,James A. Thomson,James A. Thomson,James A. Thomson,Joseph R. Ecker,Bing Ren,Bing Ren +46 more
TL;DR: It is found that promoters that are active in early developmental stages tend to be CG rich and mainly engage H3K27me3 upon silencing in nonexpressing lineages, while promoters for genes expressed preferentially at later stages are often CG poor and primarily employ DNA methylation upon repression.
Journal ArticleDOI
Engineered Perineural Vascular Plexus for Modeling Developmental Toxicity
Gaurav Kaushik,Kartik Gupta,Victoria Harms,Elizabeth E. Torr,Jonathan C. Evans,Hunter J. Johnson,Cheryl M. Soref,Suehelay Acevedo-Acevedo,Jessica Antosiewicz-Bourget,Daniel Mamott,Peyton Uhl,Brian P. Johnson,Sean P. Palecek,David J. Beebe,James A. Thomson,William T. Daly,William L. Murphy +16 more
TL;DR: By quantifying 3D cell migration, metabolic activity, vascular network disruption, and cytotoxicity, the PNVP model may be a useful tool to make physiologically relevant predictions of developmental toxicity.