M
Marco Antonio Machado
Researcher at Empresa Brasileira de Pesquisa Agropecuária
Publications - 80
Citations - 3344
Marco Antonio Machado is an academic researcher from Empresa Brasileira de Pesquisa Agropecuária. The author has contributed to research in topics: Population & Quantitative trait locus. The author has an hindex of 20, co-authored 78 publications receiving 2997 citations. Previous affiliations of Marco Antonio Machado include Universidade Federal de Juiz de Fora & Wageningen University and Research Centre.
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Journal ArticleDOI
The genome sequence of the plant pathogen Xylella fastidiosa
Andrew J. G. Simpson,Fernando C. Reinach,Paulo Arruda,F. A. Abreu,Marcio Luis Acencio,R. Alvarenga,Lucia Maria Carareto Alves,Jorge E. Araya,Gilson S. Baia,C. S. Baptista,Mario H. Barros,Eric D. Bonaccorsi,Silvana Bordin,Joseph M. Bové,Marcelo R.S. Briones,M. R.P. Bueno,Anamaria A. Camargo,Luis Eduardo Aranha Camargo,Dirce Maria Carraro,Helaine Carrer,N. B. Colauto,Carlos Augusto Colombo,Fernando Ferreira Costa,M. C. R. Costa,Claudio M. Costa-Neto,Luiz Lehmann Coutinho,M. Cristofani,Emmanuel Dias-Neto,C. Docena,Hamza El-Dorry,Agda Paula Facincani,Ari J. S. Ferreira,V. C.A. Ferreira,Jesus Aparecido Ferro,Jane Silveira Fraga,Suzelei C. França,Marília Caixeta Franco,Marcus Frohme,Luiz Roberto Furlan,M. Garnier,Gustavo H. Goldman,Maria Helena S. Goldman,Suely Lopes Gomes,Arthur Gruber,Paulo L. Ho,Joerg Hoheisel,M.L. Junqueira,Edson L. Kemper,João Paulo Kitajima,José Eduardo Krieger,Eiko E. Kuramae,F. Laigret,Marcio Rodrigues Lambais,Luciana C. C. Leite,Eliana Gertrudes de Macedo Lemos,Manoel Victor Franco Lemos,Silvio A. Lopes,Catalina Romero Lopes,J. A. Machado,Marco Antonio Machado,Alda Maria Backx Noronha Madeira,Humberto Maciel França Madeira,Humberto Maciel França Madeira,Celso Luis Marino,Marilis V. Marques,Elizabeth A. L. Martins,E. M.F. Martins,Adriana Yamaguti Matsukuma,Carlos Frederico Martins Menck,E. C. Miracca,Cristina Yumi Miyaki,Claudia Barros Monteiro-Vitorello,D. H. Moon,Maria Aparecida Nagai,Ana L. T. O. Nascimento,Luis Eduardo Soares Netto,A. Nhani,Francisco G. Nobrega,Francisco G. Nobrega,Luiz R. Nunes,Marcos Antonio de Oliveira,M. C. de Oliveira,R. C. de Oliveira,Darío Abel Palmieri,A. Paris,B. R. Peixoto,Gonçalo A.G. Pereira,H. A. Pereira,João Bosco Pesquero,Ronaldo Bento Quaggio,Patrícia G. Roberto,Vanderlei Rodrigues,Artur J.M. Rosa,V. E. de Rosa,R. G. de Sá,Roberto Vicente Santelli,H. E. Sawasaki,A.C.R. da Silva,A M da Silva,F. R. da Silva,Wilson A. Silva,J. F. da Silveira,M. L.Z. Silvestri,Walter José Siqueira,A. A. de Souza,A. P. de Souza,M. F. Terenzi,Daniela Truffi,Siu Mui Tsai,M. H. Tsuhako,Homero Vallada,M. A. Van Sluys,Sergio Verjovski-Almeida,André Luiz Vettore,Marco Antônio Zago,Mayana Zatz,João Meidanis,João C. Setubal +117 more
TL;DR: The complete genome sequence of X. fastidiosa clone 9a5c is reported, providing direct evidence of phage-mediated horizontal gene transfer and indicating that the molecular basis for bacterial pathogenicity is both conserved and independent of host.
Journal ArticleDOI
Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds
Richard A. Gibbs,Jeremy F. Taylor,Curtis P. Van Tassell,William Barendse,William Barendse,Kellye Eversole,Clare A. Gill,Ronnie D. Green,Debora L. Hamernik,Steven M. Kappes,Sigbjørn Lien,Lakshmi K. Matukumalli,Lakshmi K. Matukumalli,John C. McEwan,Lynne V. Nazareth,Robert D. Schnabel,George M. Weinstock,David A. Wheeler,Paolo Ajmone-Marsan,Paul Boettcher,Alexandre Rodrigues Caetano,José Fernando Garcia,José Fernando Garcia,Olivier Hanotte,Paola Mariani,Loren C. Skow,Tad S. Sonstegard,John L. Williams,John L. Williams,Boubacar Diallo,Lemecha Hailemariam,Mário Luiz Martinez,C. A. Morris,Luiz Otávio Campos da Silva,Richard J. Spelman,Woudyalew Mulatu,Keyan Zhao,Colette A. Abbey,Morris Agaba,Flábio R. Araújo,Rowan J. Bunch,Rowan J. Bunch,James O. Burton,C. Gorni,Hanotte Olivier,Blair E. Harrison,Blair E. Harrison,Bill Luff,Marco Antonio Machado,Joel Mwakaya,Graham Plastow,Warren Sim,Warren Sim,Timothy P. L. Smith,Merle B Thomas,Merle B Thomas,Alessio Valentini,Paul D. Williams,James E. Womack,John Woolliams,Yue Liu,Xiang Qin,Kim C. Worley,Chuan Gao,Huaiyang Jiang,Stephen S. Moore,Yanru Ren,Xingzhi Song,Carlos Bustamante,Ryan D. Hernandez,Donna M. Muzny,Shobha Patil,Anthony San Lucas,Qing Fu,Matthew Peter Kent,Richard Vega,Aruna Matukumalli,Sean McWilliam,Sean McWilliam,Gert Sclep,Katarzyna Bryc,Jung-Woo Choi,Hong Gao,John J. Grefenstette,Brenda M. Murdoch,Alessandra Stella,Rafael Villa-Angulo,Mark G. Wright,Jan Aerts,Jan Aerts,Oliver C. Jann,Riccardo Negrini,Michael E. Goddard,Michael E. Goddard,Ben J. Hayes,Daniel G. Bradley,Marcos V.B. da Silva,Marcos V.B. da Silva,Lilian P.L. Lau,George E. Liu,David J. Lynn,David J. Lynn,Francesca Panzitta,Ken G. Dodds +103 more
TL;DR: Data show that cattle have undergone a rapid recent decrease in effective population size from a very large ancestral population, possibly due to bottlenecks associated with domestication, selection, and breed formation.
Journal ArticleDOI
Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
M. A. Van Sluys,M. C. de Oliveira,Claudia Barros Monteiro-Vitorello,Cristina Yumi Miyaki,Luiz Roberto Furlan,Luis Eduardo Aranha Camargo,A.C.R. da Silva,D. H. Moon,Marco Aurélio Takita,Eliana Gertrudes de Macedo Lemos,Marco Antonio Machado,Maria Inês Tiraboschi Ferro,F. R. da Silva,Maria Helena S. Goldman,Gustavo H. Goldman,Manoel Victor Franco Lemos,Hamza El-Dorry,Siu Mui Tsai,Helaine Carrer,Dirce Maria Carraro,R. C. de Oliveira,Luiz R. Nunes,Walter José Siqueira,Luiz Lehmann Coutinho,Edna Teruko Kimura,Emer S. Ferro,Ricardo Harakava,Eiko E. Kuramae,Celso Luis Marino,E. A. Giglioti,I. L. Abreu,Lucia Maria Carareto Alves,A. M. do Amaral,Gilson S. Baia,S. R. Blanco,Michael dos Santos Brito,Fabiana de Souza Cannavan,A. V. Celestino,A. F. Da Cunha,Roseli C. Fenille,Jesus Aparecido Ferro,Eduardo Fernandes Formighieri,Luciano Takeshi Kishi,S. G. Leoni,A. R. Oliveira,Vicente E. De Rosa,F. T. Sassaki,Janete Apparecida Desidério Sena,A. A. de Souza,Daniela Truffi,Fernando Tsukumo,Giane M. Yanai,Lilian Giotto Zaros,Edwin L. Civerolo,Andrew J. G. Simpson,Nalvo F. Almeida,João C. Setubal,João Paulo Kitajima +57 more
TL;DR: The genome sequence of X. fastidiosa (Temecula strain) is reported and it is concluded that these two organisms have identical metabolic functions and are likely to use a common set of genes in plant colonization and pathogenesis, permitting convergence of functional genomic strategies.
Journal ArticleDOI
Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
Laercio R. Porto-Neto,Laercio R. Porto-Neto,Laercio R. Porto-Neto,Tad S. Sonstegard,George E. Liu,Derek M. Bickhart,Marcos V.B. da Silva,Marco Antonio Machado,Yuri Tani Utsunomiya,José Fernando Garcia,Cedric Gondro,Curtis P. Van Tassell +11 more
TL;DR: Genomic regions that are potentially linked to purifying or balancing selection processes in domestic cattle were identified and are of particular interest to understand the natural and human selective pressures to which these subspecies were exposed to and how the genetic background of these populations evolved in response to environmental challenges and human manipulation.
Journal ArticleDOI
Assessment of runs of homozygosity islands and estimates of genomic inbreeding in Gyr (Bos indicus) dairy cattle
Elisa Peripolli,Nedenia Bonvino Stafuzza,D. P. Munari,D. P. Munari,André Luis Ferreira Lima,Renato Irgang,Marco Antonio Machado,Marco Antonio Machado,João Cláudio do Carmo Panetto,Ricardo Vieira Ventura,Ricardo Vieira Ventura,Fernando Baldi,Fernando Baldi,Marcos Vinícius Gualberto Barbosa da Silva,Marcos Vinícius Gualberto Barbosa da Silva +14 more
TL;DR: Genes inside ROH islands suggest a strong selection for dairy traits and enrichment for Gyr cattle environmental adaptation and the existence of a moderate correlation between larger ROH indicates that FROH can be used as an alternative to inbreeding estimates in the absence of pedigree records.