J
Jörg Hagmann
Researcher at Max Planck Society
Publications - 36
Citations - 2282
Jörg Hagmann is an academic researcher from Max Planck Society. The author has contributed to research in topics: DNA methylation & Genome. The author has an hindex of 18, co-authored 33 publications receiving 1962 citations.
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Journal ArticleDOI
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
Claude Becker,Jörg Hagmann,Jonas Müller,Daniel Koenig,Oliver Stegle,Karsten M. Borgwardt,Detlef Weigel +6 more
TL;DR: Compared genome-wide DNA methylation among 10 A. thaliana lines, differentially methylated sites were farther from transposable elements and showed less association with short interfering RNA expression than invariant positions, which has important implications for the potential contribution of sequence-independent epialleles to plant evolution.
Journal ArticleDOI
Simultaneous alignment of short reads against multiple genomes
Korbinian Schneeberger,Jörg Hagmann,Stephan Ossowski,Norman Warthmann,Sandra Gesing,Oliver Kohlbacher,Detlef Weigel +6 more
TL;DR: GenomeMapper supports simultaneous mapping of short reads against multiple genomes by integrating related genomes into a single graph structure and introduces representations for alignments against complex structures.
Journal ArticleDOI
Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity
Anjar Wibowo,Claude Becker,Gianpiero Marconi,Gianpiero Marconi,Julius Durr,Jonathan Price,Jörg Hagmann,Ranjith K Papareddy,Hadi Putra,Jorge Kageyama,Jörg Becker,Detlef Weigel,José F. Gutierrez-Marcos +12 more
TL;DR: These findings reveal that plants use a highly dynamic maternal ‘short-term stress memory’ with which to respond to adverse external conditions and epigenetically targeted sequences function as distantly-acting control elements of antisense long non-coding RNAs, which in turn regulate targeted gene expression in response to stress.
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Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation
Eva-Maria Willing,Vimal Rawat,Terezie Mandáková,Florian Maumus,Geo Velikkakam James,Karl Nordström,Karl Nordström,Claude Becker,Norman Warthmann,Norman Warthmann,Claudia Chica,Claudia Chica,Bogna Szarzynska,Bogna Szarzynska,Matthias Zytnicki,Maria C. Albani,Maria C. Albani,Christiane Kiefer,Sara Bergonzi,Sara Bergonzi,Loren Castaings,Loren Castaings,Julieta L. Mateos,Julieta L. Mateos,Markus C. Berns,Nora Bujdoso,Thomas Piofczyk,Laura de Lorenzo,Laura de Lorenzo,Cristina Barrero-Sicilia,Cristina Barrero-Sicilia,I. Mateos,Mathieu Piednoël,Jörg Hagmann,Romy Chen-Min-Tao,Romy Chen-Min-Tao,Raquel Iglesias-Fernández,Stephan C. Schuster,Carlos Alonso-Blanco,François Roudier,Pilar Carbonero,Javier Paz-Ares,Seth J. Davis,Seth J. Davis,Ales Pecinka,Hadi Quesneville,Vincent Colot,Martin A. Lysak,Detlef Weigel,George Coupland,Korbinian Schneeberger +50 more
TL;DR: A de novo assembly for the 375 Mb genome of the perennial model plant, Arabis alpina, revealed long-lasting and recent transposable element activity predominately driven by Gypsy long terminal repeat retrotransposons, which extended the low-recombining pericentromeres and transformed large formerly euchromatic regions into repeat-rich pericentromeric regions.
Journal ArticleDOI
Regulation of plasma membrane blebbing by the cytoskeleton.
TL;DR: The results confirm earlier suggestions that actin polymerization is required for bleb retraction and for the first time directly relate the two events.