K
Katina I. Spanier
Researcher at Katholieke Universiteit Leuven
Publications - 21
Citations - 1643
Katina I. Spanier is an academic researcher from Katholieke Universiteit Leuven. The author has contributed to research in topics: Gene regulatory network & Gene. The author has an hindex of 11, co-authored 17 publications receiving 927 citations. Previous affiliations of Katina I. Spanier include Ruhr University Bochum & Catholic University of Leuven.
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Journal ArticleDOI
A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain
Kristofer Davie,Janssens J,Duygu Koldere,De Waegeneer M,Uli Pech,Łukasz Kreft,Sara Aibar,Samira Makhzami,Valerie Christiaens,Carmen Bravo González-Blas,Suresh Poovathingal,Gert Hulselmans,Katina I. Spanier,Thomas Moerman,Bram Vanspauwen,Sarah Geurs,Thierry Voet,Jeroen Lammertyn,Bernard Thienpont,Sha Liu,Nikos Konstantinides,Mark Fiers,Patrik Verstreken,Stein Aerts +23 more
TL;DR: A single-cell transcriptome atlas of the entire adult Drosophila melanogaster brain sampled across its lifespan is presented, allowing comprehensive exploration of all transcriptional states of an entire aging brain.
Journal ArticleDOI
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Hongjie Li,Jasper Janssens,Maxime de Waegeneer,Sai Saroja Kolluru,Kristofer Davie,Vincent Gardeux,Wouter Saelens,Fabrice P. A. David,Maria Brbic,Katina I. Spanier,Jure Leskovec,Colleen N. McLaughlin,Qijing Xie,Robert C. Jones,Katja Brueckner,Jiwon Shim,Sudhir Gopal Tattikota,Frank Schnorrer,Katja Rust,Todd G. Nystul,Zita Carvalho-Santos,Carlos Ribeiro,Soumitra Pal,Sharvani Mahadevaraju,Teresa M. Przytycka,Aaron M. Allen,Stephen F. Goodwin,Cameron Wynn Berry,Margaret T. Fuller,Helen White-Cooper,Erika Matunis,Stephen DiNardo,Anthony Galenza,Lucy Erin O'Brien,Julian A. T. Dow,Heinrich Jasper,Brian Oliver,Norbert Perrimon,Bart Deplancke,Stephen R. Quake,Liqun Luo,Stein Aerts,Devika Agarwal,Yasir H. Ahmed-Braimah,Michelle N. Arbeitman,Majd M. Ariss,Jordan Augsburger,K. R. Ayush,Catherine C. Baker,Torsten U. Banisch,Katja Birker,Rolf Bodmer,Benjamin Bolival,Susanna E. Brantley,Julie A. Brill,Nora C Brown,Norene A. Buehner,Xiao Cai,Rita Cardoso-Figueiredo,Fernando Casares,Amy K. Chang,Thomas R. Clandinin,Sheela Crasta,Claude Desplan,Angela M. Detweiler,Darshan B. Dhakan,Erika Donà,Steffi Engert,Swann Floc'hlay,Nancy F. George,Amanda J. González-Segarra,Andrew K. Groves,Samantha C. Gumbin,Yanmeng Guo,Devon E Harris,Yael Heifetz,Stephen L. Holtz,Felix Horns,Bruno Hudry,Ruei-Jiun Hung,Yuh Nung Jan,Jacob S Jaszczak,Gregory S.X.E. Jefferis,Jim Karkanias,Timothy L. Karr,Nadja Sandra Katheder,James N. Kezos,Anna Kim,Seung K. Kim,Lutz Kockel,Nikolaos Konstantinides,Thomas B. Kornberg,Henry M. Krause,Andrew T. Labott,Meghan Laturney,Ruth Lehmann,Sarah G Leinwand,Jiefu Li,Joshua Shing Shun Li,Kai Li,Kexin Li,Liying Li,Tun Li,Maria Litovchenko,Hanji Liu,Yifang Liu,Tzu-Chiao Lu,Jonathan Ryan Manning,A. De Mase,Mikaela Matera-Vatnick,Neuza Reis Matias,Caitlin E. McDonough-Goldstein,Aaron McGeever,Alex D McLachlan,Paola Moreno-Román,Norma F. Neff,Megan Neville,Sang Ngo,Tanja Nielsen,Caitlin E. O’Brien,David Osumi-Sutherland,Mehmet Neset Özel,Irene Papatheodorou,Maja Petkovic,Ch. Pilgrim,Angela Oliveira Pisco,Carolina E. Reisenman,Erin Sanders,Gilberto dos Santos,Kristin Scott,Aparna Sherlekar,Philip Shiu,David Sims,Rene Sit,Maija Slaidina,Harold E. Smith,Gabriella R Sterne,Yu-han Su,Daniel Alexander Sutton,Marco Tamayo,Michelle Tan,Ibrahim Tastekin,Christoph Daniel Treiber,David Vacek,Georg Vogler,Scott Waddell,Wanpeng Wang,Rachel Wilson,Mariana F. Wolfner,Yiu-Cheung E. Wong,Anthony Xie,Jun Xu,Shinya Yamamoto,Jiamei Yan,Zepeng Yao,Kazuki Yoda,Ruijun Zhu,Robert P. Zinzen +157 more
TL;DR: A single-cell atlas of the adult fly, Tabula Drosophilae, that includes 580,000 nuclei from 15 individually dissected sexed tissues as well as the entire head and body, annotated to >250 distinct cell types is presented, providing an in-depth analysis of cell type–related gene signatures and transcription factor markers, as as sexual dimorphism, across the whole animal.
Journal ArticleDOI
Prebiotic effects of arabinoxylan oligosaccharides on juvenile Siberian sturgeon (Acipenser baerii) with emphasis on the modulation of the gut microbiota using 454 pyrosequencing.
Zahra Geraylou,Caroline Souffreau,Eugène Rurangwa,Eugène Rurangwa,Gregory E. Maes,Gregory E. Maes,Katina I. Spanier,Christophe M. Courtin,Jan A. Delcour,Johan Buyse,Frans Ollevier +10 more
TL;DR: Redundancy analysis showed a distinct and significant clustering of the gut microbiota of individuals consuming an AXOS diet, demonstrating a shift in the hindgut microbiome of fish consuming different preparation of AXOS, with potential application as prebiotics.
Journal ArticleDOI
Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma
Jasper Wouters,Zeynep Kalender-Atak,Zeynep Kalender-Atak,Liesbeth Minnoye,Katina I. Spanier,Maxime de Waegeneer,Carmen Bravo González-Blas,David Mauduit,Kristofer Davie,Gert Hulselmans,Ahmad Najem,Michael Dewaele,Dennis Pedri,Florian Rambow,Samira Makhzami,Valerie Christiaens,Frederik Ceyssens,Ghanem Elias Ghanem,Jean-Christophe Marine,Suresh Poovathingal,Stein Aerts +20 more
TL;DR: Analysis of melanoma cultures and large-scale gene expression analysis in patient samples indicate that an intermediate state exists and is driven by a distinct and stable ‘mixed’ GRN rather than being a symbiotic heterogeneous mix of cells.
Journal ArticleDOI
Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
Luisa Orsini,Donald L. Gilbert,Ram Podicheti,Mieke Jansen,James B. Brown,Omid Shams Solari,Katina I. Spanier,John K. Colbourne,Douglas Rush,Ellen Decaestecker,Jana Asselman,Karel A.C. De Schamphelaere,Dieter Ebert,Christoph R. Haag,Jouni Kvist,Christian Laforsch,Adam Petrusek,Andrew P. Beckerman,Tom J. Little,Anurag Chaturvedi,Michael E. Pfrender,Luc De Meester,Mikko J. Frilander +22 more
TL;DR: The STRESSFLEA consortium generated a comprehensive RNA-Seq data set by exposing two inbred genotypes of D. magna and a recombinant cross of these genotypes to a range of environmental perturbations to investigate links between genes and the environment.