L
Lei Du
Publications - 11
Citations - 11366
Lei Du is an academic researcher. The author has contributed to research in topics: DNA sequencing & Gene. The author has an hindex of 8, co-authored 9 publications receiving 11066 citations.
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Journal ArticleDOI
Genome sequencing in microfabricated high-density picolitre reactors
Marcel Margulies,Michael Egholm,William E. Altman,Said Attiya,Joel S. Bader,Lisa A. Bemben,Jan Berka,Michael S. Braverman,Yi-Ju Chen,Zhoutao Chen,Scott Dewell,Lei Du,J. M. Fierro,Xavier V. Gomes,Brian C. Godwin,Wen He,Scott Edward Helgesen,Chun Heen Ho,Gerard P. Irzyk,Szilveszter C. Jando,Maria L. I. Alenquer,Thomas P. Jarvie,Kshama B. Jirage,Jong-Bum Kim,James R. Knight,Janna R. Lanza,John H. Leamon,Steven Lefkowitz,Ming Lei,Jing Li,Kenton Lohman,Hong Lu,Vinod Makhijani,Keith Mcdade,Michael P. McKenna,Eugene W. Myers,Elizabeth Nickerson,John Nobile,Ramona Plant,Bernard P. Puc,Michael T. Ronan,George T. Roth,Gary J. Sarkis,Jan Fredrik Simons,John Simpson,Maithreyan Srinivasan,Karrie R. Tartaro,Alexander Tomasz,Kari A. Vogt,Greg A. Volkmer,Shally H. Wang,Yong Wang,Michael P. Weiner,Pengguang Yu,Richard F. Begley,Jonathan M. Rothberg +55 more
TL;DR: A scalable, highly parallel sequencing system with raw throughput significantly greater than that of state-of-the-art capillary electrophoresis instruments with 96% coverage at 99.96% accuracy in one run of the machine is described.
Journal ArticleDOI
Paired-end mapping reveals extensive structural variation in the human genome.
Jan O. Korbel,Alexander E. Urban,Jason P. Affourtit,Brian C. Godwin,Fabian Grubert,Jan Fredrik Simons,Philip M. Kim,Dean Palejev,Nicholas Carriero,Lei Du,Bruce E. Taillon,Zhoutao Chen,Andrea Tanzer,A. C. Eugenia Saunders,Jianxiang Chi,Fengtang Yang,Nigel P. Carter,Matthew E. Hurles,Sherman M. Weissman,Timothy T. Harkins,Mark Gerstein,Michael Egholm,Michael Snyder +22 more
TL;DR: High-throughput and massive paired-end mapping (PEM) was used to map SVs in an African and in a putatively European individual and identified shared and divergent SVs relative to the reference genome, documenting that the number of SVs among humans is much larger than initially hypothesized; many of the SVs potentially affect gene function.
Journal ArticleDOI
Analysis of one million base pairs of Neanderthal DNA
Richard E. Green,Johannes Krause,Susan E. Ptak,Adrian W. Briggs,Michael T. Ronan,Jan Fredrik Simons,Lei Du,Michael Egholm,Jonathan M. Rothberg,Maja Paunović,Svante Pääbo +10 more
TL;DR: A 38,000-year-old Neanderthal fossil that is exceptionally free of contamination from modern human DNA is identified and it is revealed that modern human and Neanderthal DNA sequences diverged on average about 500,000 years ago.
Journal ArticleDOI
A new arenavirus in a cluster of fatal transplant-associated diseases.
Gustavo Palacios,Julian Druce,Lei Du,Thomas Tran,Chris Birch,Thomas Briese,Sean Conlan,Phuong-Lan Quan,Jeffrey Hui,John C. Marshall,Jan Fredrik Simons,Michael Egholm,Christopher D. Paddock,Wun-Ju Shieh,Cynthia S. Goldsmith,Sherif R. Zaki,Mike Catton,W. Ian Lipkin +17 more
TL;DR: The use of high-throughput sequencing during an outbreak of disease facilitated the identification of a new arenavirus transmitted through solid-organ transplantation, related to lymphocytic choriomeningitis viruses.
Journal ArticleDOI
Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA
Mathias Stiller,Richard E. Green,Michael T. Ronan,Jan Fredrik Simons,Lei Du,W. He,Michael Egholm,Jonathan M. Rothberg,Susan G. Keates,Nikolai D. Ovodov,E. E. Antipina,Gennady F. Baryshnikov,Yaroslav V. Kuzmin,A. A. Vasilevski,Gerald E. Wuenschell,John Termini,Michael Hofreiter,Viviane Jaenicke-Després,Svante Pääbo +18 more
TL;DR: This article used a massively parallel sequencing method that allows large numbers of single DNA strands to be sequenced, and showed that modifications of C, as well as to a lesser extent of G, residues cause such misincorporations.