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Michael Feldgarden
Researcher at National Institutes of Health
Publications - 35
Citations - 21095
Michael Feldgarden is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Genome & Human microbiome. The author has an hindex of 24, co-authored 32 publications receiving 18253 citations. Previous affiliations of Michael Feldgarden include Broad Institute & Harvard University.
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Using the NCBI AMRFinder Tool to Determine Antimicrobial Resistance Genotype-Phenotype Correlations Within a Collection of NARMS Isolates
Michael Feldgarden,Brover,Daniel H. Haft,Arjun B. Prasad,Douglas J. Slotta,Igor Tolstoy,Gregory H. Tyson,Shaohua Zhao,Chih-Hao Hsu,Patrick F. McDermott,Daniel A. Tadesse,Cesar A. Morales,Mustafa Simmons,Glenn E. Tillman,Jamie L. Wasilenko,Jason P. Folster,William Klimke +16 more
TL;DR: A database of 4,579 acquired antimicrobial resistance genes, the largest publicly available, and a software tool to identify genes in bacterial genomes, AMRFinder are described, which appears to be a highly accurate AMR gene detection system.
Journal ArticleDOI
Database resources of the National Center for Biotechnology Information in 2023.
Eric W. Sayers,Evan E Bolton,J. Rodney Brister,Kathi Canese,Jessica Chan,Donald C. Comeau,Catherine M. Farrell,Michael Feldgarden,Anna M Fine,Kathryn Funk,Eneida L. Hatcher,Sivakumar Kannan,Christopher Kelly,Sunghwan Kim,William Klimke,Melissa J. Landrum,Stacy Lathrop,Zhi Yong Lu,Thomas L. Madden,Adriana J. Malheiro,Aron Marchler-Bauer,Terence Murphy,Long Duc Phan,Shashikant Pujar,Sanjida H. Rangwala,Valerie A. Schneider,Tony Tse,Jiyao Wang,Jian Ye,Barton W. Trawick,Kim D. Pruitt,Stephen T. Sherry +31 more
TL;DR: The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in life science journals as discussed by the authors .
Journal ArticleDOI
Standardized metadata for human pathogen/vector genomic sequences.
Vivien G. Dugan,Vivien G. Dugan,Scott J. Emrich,Gloria I. Giraldo-Calderón,Omar S. Harb,Ruchi M. Newman,Brett E. Pickett,Lynn M. Schriml,Timothy B. Stockwell,Christian J. Stoeckert,Daniel E. Sullivan,Indresh Singh,Doyle V. Ward,Alison Yao,Jie Zheng,Tanya Barrett,Bruce W. Birren,Lauren M. Brinkac,Vincent M. Bruno,Elizabet Caler,Sinéad B. Chapman,Frank H. Collins,Christina A. Cuomo,Valentina Di Francesco,Scott Durkin,Mark Eppinger,Michael Feldgarden,Claire M. Fraser,W. Florian Fricke,Maria Y. Giovanni,Matthew R. Henn,Erin Hine,Julie C. Dunning Hotopp,Ilene Karsch-Mizrachi,Jessica C. Kissinger,Eun Mi Lee,Punam Mathur,Emmanuel F. Mongodin,Cheryl I. Murphy,Garry S. A. Myers,Daniel E. Neafsey,Karen E. Nelson,William C. Nierman,Julia Puzak,David A. Rasko,David S. Roos,Lisa Sadzewicz,Joana C. Silva,Bruno W. S. Sobral,R. Burke Squires,Rick Stevens,Luke J. Tallon,Hervé Tettelin,David E. Wentworth,Owen White,Rebecca Will,Jennifer R. Wortman,Yun Zhang,Richard H. Scheuermann,Richard H. Scheuermann +59 more
TL;DR: The use of this metadata standard by all ongoing and future GSCID sequencing projects will provide a consistent representation of these data in the BRC resources and other repositories that leverage these data, allowing investigators to identify relevant genomic sequences and perform comparative genomics analyses that are both statistically meaningful and biologically relevant.
Journal ArticleDOI
Genomics of Corynebacterium striatum, an emerging multidrug-resistant pathogen of immunocompromised patients
Kathleen Nudel,Xiaomin Zhao,Sankha S. Basu,Xiaoxi Dong,Maria Hoffmann,Michael Feldgarden,Marc W. Allard,Michael Klompas,Lynn Bry +8 more
TL;DR: In-depth genomic studies of MDR C. striatum reveal its capacity for clonal spread within and across healthcare institutions and identify novel vectors that can mobilize multiple forms of drug resistance, further complicating efforts to treat infections in immunocompromised populations.
Journal ArticleDOI
Whole-genome sequences of 94 environmental isolates of Bacillus cereus sensu Lato
Géraldine A. Van der Auwera,Géraldine A. Van der Auwera,Michael Feldgarden,Roberto Kolter,Jacques Mahillon +4 more
TL;DR: The draft genome sequences of 94 isolates of B. cereus sensu lato are presented, which were chosen for their plasmid content and environmental origins.