O
Owen White
Researcher at University of Maryland, Baltimore
Publications - 109
Citations - 90316
Owen White is an academic researcher from University of Maryland, Baltimore. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 78, co-authored 105 publications receiving 84710 citations. Previous affiliations of Owen White include Texas A&M University & TigerLogic.
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Journal ArticleDOI
Sequence and analysis of the Arabidopsis genome.
Michael W. Bevan,Klaus F. X. Mayer,Owen White,Jonathan A. Eisen,Daphne Preuss,Thomas E. Bureau,Steven L. Salzberg,Hans-Werner Mewes +7 more
TL;DR: The comprehensive analysis of the genome sequence of the plant Arabidopsis thaliana has been completed recently and much remains to be done to refine the analysis of encoded genes and define the functions of encoded proteins systematically.
Book ChapterDOI
Sybil: methods and software for multiple genome comparison and visualization.
TL;DR: A two-phase protein clustering algorithm, used to generate protein clusters suitable for analysis through Sybil and a method for creating graphical displays of protein or gene clusters that span multiple genomes are described.
Journal ArticleDOI
Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage
Richard P. Bishop,Trushar Shah,Roger Pelle,David C. Hoyle,Terry W. Pearson,Lee R. Haines,Andy Brass,Helen Hulme,Simon P. Graham,Evans L. N. Taracha,Simon Kang’a,Charles Lu,Brian Hass,Jennifer R. Wortman,Owen White,Malcolm J. Gardner,Vishvanath Nene,Etienne P. de Villiers +17 more
TL;DR: The data suggests a low level of baseline transcription from the majority of protein-coding genes, and concordance between transcription and protein expression for heat shock proteins that were very highly expressed according to MPSS and proteomics.
Journal Article
A framework for human microbiome research
Barbara A. Methé,Karen E. Nelson,Mihai Pop,Heather Huot Creasy,Michelle G. Giglio,Curtis Huttenhower,Dirk Gevers,Joseph F. Petrosino,Sahar Abubucker,Jonathan H. Badger,Asif T. Chinwalla,Ashlee M. Earl,Michael Fitzgerald,Robert S. Fulton,Kymberlie Hallsworth-Pepin,Elizabeth A. Lobos,Ramana Madupu,Vincent Magrini,John Martin,Makedonka Mitreva,Donna M. Muzny,Erica Sodergren,James Versalovic,Aye Wollam,Kim C. Worley,Jennifer R. Wortman,Sarah Young,Qiandong Zeng,Kjersti Aagaard,Olukemi O. Abolude,Emma Allen-Vercoe,Eric J. Alm,Lucia Alvarado,Gary L. Andersen,Scott Anderson,Elizabeth L. Appelbaum,Harindra Arachchi,Gary C. Armitage,Cesar Arze,Tulin Ayvaz,Carl C. Baker,Lisa Begg,Tsegahiwot Belachew,Veena Bhonagiri,Monika Bihan,Martin J. Blaser,Toby Bloom,Vivien Bonazzi,Paul Brooks,Gregory A. Buck,Christian J. Buhay,Dana A. Busam,Joseph L. Campbell,Shane Canon,Brandi L. Cantarel,Patrick S. G. Chain,I-Min A. Chen,Lei Chen,Shaila Chhibba,Ken Chu,Dawn Ciulla,Jose C. Clemente,Sandra W. Clifton,Sean Conlan,Jonathan Crabtree,Mary A. Cutting,Noam J. Davidovics,Catherine C. Davis,Todd Z. DeSantis,Carolyn Deal,Kimberley D. Delehaunty,Floyd E. Dewhirst,Elena Deych,Yan Ding,David J. Dooling,Shannon Dugan,W. Michael Dunne,A. Scott Durkin,Robert C. Edgar,Rachel L. Erlich,Candace N. Farmer,Ruth M. Farrell,Karoline Faust,Michael Feldgarden,Victor Felix,Sheila A. Fisher,Anthony A. Fodor,Larry J. Forney,Leslie Foster,Valentina Di Francesco,Jonathan Friedman,Dennis C. Friedrich,Catrina Fronick,Lucinda Fulton,Hongyu Gao,Nathalia Garcia,Georgia Giannoukos,Christina Giblin,Maria Y. Giovanni,Jonathan M. Goldberg,Johannes B. Goll,Antonio Gonzalez,Allison D. Griggs,Sharvari Gujja,Brian J. Haas,Holli A. Hamilton,Emily L. Harris,Theresa A. Hepburn,Brandi Herter,Diane E. Hoffmann,Michael Holder,Clinton Howarth,Katherine H. Huang,Susan M. Huse,Jacques Izard,Janet K. Jansson,Huaiyang Jiang,Craig T. Jordan,Vandita Joshi,James A. Katancik,Wendy A. Keitel,Scott T. Kelley,Cristyn Kells,Susan Kinder-Haake,Nicholas B. King,Rob Knight,Dan Knights,Heidi H. Kong,Omry Koren,Sergey Koren,Karthik Kota,Christie Kovar,Nikos C. Kyrpides,Patricio S. La Rosa,Sandra L. Lee,Katherine P. Lemon,Niall J. Lennon,Cecil M. Lewis,Lora Lewis,Ruth E. Ley,Kelvin Li,Konstantinos Liolios,Bo Liu,Yue Liu,Chien-Chi Lo,Catherine A. Lozupone,R. Dwayne Lunsford,Tessa Madden,Anup Mahurkar,Peter J. Mannon,Elaine R. Mardis,Victor M. Markowitz,Konstantinos Mavrommatis,Jamison McCorrison,Daniel McDonald,Jean E. McEwen,Amy L. McGuire,Pamela McInnes,Teena Mehta,Kathie A. Mihindukulasuriya,Jason R. Miller,Patrick Minx,Irene Newsham,Chad Nusbaum,Michelle O'Laughlin,Joshua Orvis,Ioanna Pagani,Krishna Palaniappan,Shital M. Patel,Matthew D. Pearson,Jane Peterson,Mircea Podar,Craig Pohl,Katherine S. Pollard,Margaret Priest,Lita M. Proctor,Xiang Qin,Jeroen Raes,Jacques Ravel,Jeffrey G. Reid,Mina Rho,Rosamond Rhodes,Kevin Riehle,Maria C. Rivera,Beltran Rodriguez-Mueller,Yu-Hui Rogers,Matthew C. Ross,Carsten Russ,Ravi Sanka,Pamela Sankar,J. Fah Sathirapongsasuti,Jeffery A. Schloss,Patrick D. Schloss,Thomas M. Schmidt,Matthew B. Scholz,Lynn M. Schriml,Alyxandria M. Schubert,Nicola Segata,Julia A. Segre,William D. Shannon,Richard R. Sharp,Thomas J. Sharpton,Narmada Shenoy,Nihar U. Sheth,Gina A. Simone,Indresh Singh,Christopher Smillie,Jack D. Sobel,Daniel D. Sommer,Paul Spicer,Granger G. Sutton,Sean M. Sykes,Diana Tabbaa,Mathangi Thiagarajan,Chad Tomlinson,Manolito Torralba,Todd J. Treangen,Rebecca Truty,Tatiana A. Vishnivetskaya,Jason Walker,Lu Wang,Zhengyuan Wang,Doyle V. Ward,Wesley C. Warren,Mark A. Watson,Christopher Wellington,Kris A. Wetterstrand,James R. White,Katarzyna Wilczek-Boney,Yuan Qing Wu,Kristine M. Wylie,Todd Wylie,Chandri N. Yandava,Liang Ye,Yuzhen Ye,Shibu Yooseph,Bonnie P. Youmans,Lan Zhang,Yanjiao Zhou,Yiming Zhu,Laurie Zoloth,Jeremy Zucker,Bruce W. Birren,Richard A. Gibbs,Sarah K. Highlander,George M. Weinstock,Richard K. Wilson,Owen White +247 more
TL;DR: Resources from a population of 242 healthy adults sampled at 15 or 18 body sites up to three times are presented, which have generated 5,177 microbial taxonomic profiles from 16S ribosomal RNA genes and over 3.5 terabases of metagenomic sequence so far.
Posted ContentDOI
gEAR: gene Expression Analysis Resource portal for community-driven, multi-omic data exploration
Joshua Orvis,Brian Gottfried,Jayaram Kancherla,Ricky S. Adkins,Yang Song,Amiel A. Dror,Dustin Olley,Kevin Rose,Elena Chrysostomou,Michael C. Kelly,Beatrice Milon,Maggie S. Matern,Hela Azaiez,Brian R. Herb,Carlo Colantuoni,Robert L. Carter,Seth A. Ament,Matthew W. Kelley,Owen White,Héctor Corrada Bravo,Anup Mahurkar,Ronna Hertzano +21 more
TL;DR: The gEAR portal is an open access community-driven tool for multi-omic and multi-species data visualization, analysis and sharing that supports visualization of multiple RNA-seq data types and epigenomics data, from multiple species, time points and tissues in a single-page, user-friendly browsable format.