O
Owen White
Researcher at University of Maryland, Baltimore
Publications - 109
Citations - 90316
Owen White is an academic researcher from University of Maryland, Baltimore. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 78, co-authored 105 publications receiving 84710 citations. Previous affiliations of Owen White include Texas A&M University & TigerLogic.
Papers
More filters
Journal ArticleDOI
Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana
Xiaoying Lin,Samir Kaul,Steve Rounsley,Terrance Shea,Maria-Ines Benito,Christopher D. Town,Claire Fujii,Tanya Mason,Cheryl Bowman,Mary Barnstead,Tamara Feldblyum,C. Robin Buell,Karen A. Ketchum,John Lee,Catherine M. Ronning,Hean L. Koo,Kelly Moffat,Lisa A. Cronin,Mian Shen,Grace Pai,Susan Van Aken,Lowell Umayam,Luke J. Tallon,John Gill,Mark Raymond Adams,Ana J. Carrera,Todd Creasy,Howard M. Goodman,Chris Somerville,Gregory P. Copenhaver,Daphne Preuss,William C. Nierman,Owen White,Jonathan A. Eisen,Steven L. Salzberg,Claire M. Fraser,J. Craig Venter +36 more
TL;DR: The sequence of chromosome 2 from the Columbia ecotype is reported in two gap-free assemblies (contigs) of 3.6 and 16 megabases, which represents the longest published stretch of uninterrupted DNA sequence assembled from any organism to date.
Journal ArticleDOI
Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39
Timothy D. Read,Robert C. Brunham,Caixia Shen,Steven R. Gill,John F. Heidelberg,Owen White,Erin Hickey,Jeremy Peterson,T. Utterback,Kristi Berry,S. Bass,K. Linher,Janice Weidman,Hoda Khouri,B. Craven,Cheryl Bowman,Robert J. Dodson,Michelle L. Gwinn,William C. Nelson,Robert T. DeBoy,James F. Kolonay,G. McClarty,Steven L. Salzberg,Jonathan A. Eisen,Claire M. Fraser +24 more
TL;DR: The striking synteny of the Chlamydia genomes and prevalence of tandemly duplicated genes are evidence of minimal chromosome rearrangement and foreign gene uptake, presumably owing to the ecological isolation of the obligate intracellular parasites.
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
Sahar Abubucker,Nicola Segata,Johannes B. Goll,Alyxandria M. Schubert,Jacques Izard,Brandi L. Cantarel,Beltran Rodriguez-Mueller,Jeremy Zucker,Mathangi Thiagarajan,Bernard Henrissat,Owen White,Scott T. Kelley,Barbara A. Methé,Patrick D. Schloss,Dirk Gevers,Makedonka Mitreva,Curtis Huttenhower,Curtis Huttenhower +17 more
TL;DR: This work determined the gene families and pathways present or absent within a community, as well as their relative abundances, directly from short sequence reads, enabling the determination of community roles in the HMP cohort and in future metagenomic studies.
Journal ArticleDOI
Comparative genomics of trypanosomatid parasitic protozoa.
Najib M. El-Sayed,Peter J. Myler,Peter J. Myler,Gaëlle Blandin,Matthew Berriman,Jonathan Crabtree,Gautam Aggarwal,Elisabet Caler,Hubert Renauld,Elizabeth A. Worthey,Christiane Hertz-Fowler,Elodie Ghedin,Christopher S. Peacock,Daniella Castanheira Bartholomeu,Brian J. Haas,Anh Nhi Tran,Jennifer R. Wortman,U. Cecilia M. Alsmark,Samuel V. Angiuoli,Atashi Anupama,Jonathan H. Badger,Frédéric Bringaud,Eithon Cadag,Jane M. Carlton,Gustavo C. Cerqueira,Todd Creasy,Arthur L. Delcher,Appolinaire Djikeng,T. Martin Embley,Christopher R. Hauser,Alasdair Ivens,Sarah K. Kummerfeld,José B. Pereira-Leal,Daniel Nilsson,Jeremy Peterson,Steven L. Salzberg,Joshua Shallom,Joana C. Silva,Jaideep P. Sundaram,Scott J. Westenberger,Owen White,Sara E. Melville,John E. Donelson,Björn Andersson,Kenneth Stuart,Kenneth Stuart,Neil Hall +46 more
TL;DR: No evidence that these species are descended from an ancestor that contained a photosynthetic endosymbiont is revealed, and a conserved core proteome of about 6200 genes in large syntenic polycistronic gene clusters is revealed.
Journal ArticleDOI
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis
Jane M. Carlton,Robert P. Hirt,Joana C. Silva,Arthur L. Delcher,Michael C. Schatz,Qi Zhao,Jennifer R. Wortman,Shelby L. Bidwell,U. Cecilia M. Alsmark,Sébastien Besteiro,Thomas Sicheritz-Pontén,Christophe Noël,Joel B. Dacks,Peter G. Foster,Cedric Simillion,Yves Van de Peer,Diego Miranda-Saavedra,Geoffrey J. Barton,Gareth D. Westrop,Sylke Müller,Daniele Dessì,Pier Luigi Fiori,Qinghu Ren,Ian T. Paulsen,Hanbang Zhang,Felix D. Bastida-Corcuera,Augusto Simoes-Barbosa,Mark T. Brown,Richard D. Hayes,Mandira Mukherjee,Cheryl Y. M. Okumura,Rachel E. Schneider,Alias J. Smith,Stepanka Vanacova,Maria Villalvazo,Brian J. Haas,Mihaela Pertea,Tamara Feldblyum,T. Utterback,Chung-Li Shu,Kazutoyo Osoegawa,Pieter J. de Jong,Ivan Hrdy,Lenka Horváthová,Zuzana Zubáčová,Pavel Dolezal,Shehre-Banoo Malik,John M. Logsdon,Katrin Henze,Arti Gupta,Ching C. Wang,R. L. Dunne,Jacqueline A. Upcroft,Peter Upcroft,Owen White,Steven L. Salzberg,Petrus Tang,Cheng-Hsun Chiu,Ying-Shiung Lee,T. Martin Embley,Graham H. Coombs,Jeremy C. Mottram,Jan Tachezy,Claire M. Fraser-Liggett,Patricia J. Johnson +64 more
TL;DR: The genome sequence of the protist Trichomonas vaginalis predicts previously unknown functions for the hydrogenosome, which support a common evolutionary origin of this unusual organelle with mitochondria.