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Thea A. Egelhofer
Researcher at University of California, Santa Cruz
Publications - 25
Citations - 3544
Thea A. Egelhofer is an academic researcher from University of California, Santa Cruz. The author has contributed to research in topics: Caenorhabditis elegans & Chromatin. The author has an hindex of 19, co-authored 24 publications receiving 3192 citations.
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Journal ArticleDOI
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
Mark Gerstein,Zhi John Lu,Eric L. Van Nostrand,Chao Cheng,Bradley I. Arshinoff,Tao Liu,Kevin Y. Yip,R. Robilotto,Andreas Rechtsteiner,Kohta Ikegami,P. Alves,A. Chateigner,Marc D. Perry,Mitzi Morris,Raymond K. Auerbach,X. Feng,Jing Leng,A. Vielle,Wei Niu,Kahn Rhrissorrakrai,Ashish Agarwal,Roger P. Alexander,Galt P. Barber,Cathleen M. Brdlik,J. Brennan,Jeremy Brouillet,Adrian Carr,Ming Sin Cheung,Hiram Clawson,Sergio Contrino,Luke Dannenberg,Abby F. Dernburg,Arshad Desai,L. Dick,Andréa C. Dosé,Jiang Du,Thea A. Egelhofer,Sevinc Ercan,Ghia Euskirchen,Brent Ewing,Elise A. Feingold,Reto Gassmann,Peter J. Good,Philip Green,Francois Gullier,M. Gutwein,Mark S. Guyer,Lukas Habegger,Ting Han,Jorja G. Henikoff,Stefan R. Henz,Angie S. Hinrichs,H. Holster,Tony Hyman,A. Leo Iniguez,J. Janette,M. Jensen,Masaomi Kato,W. James Kent,E. Kephart,Vishal Khivansara,Ekta Khurana,John Kim,P. Kolasinska-Zwierz,Eric C. Lai,Isabel J. Latorre,Amber Leahey,Suzanna E. Lewis,Paul Lloyd,Lucas Lochovsky,Rebecca F. Lowdon,Yaniv Lubling,Rachel Lyne,Michael J. MacCoss,Sebastian D. Mackowiak,Marco Mangone,Sheldon J. McKay,D. Mecenas,Gennifer E. Merrihew,David M. Miller,A. Muroyama,John I. Murray,Siew Loon Ooi,Hoang Pham,T. Phippen,Elicia Preston,Nikolaus Rajewsky,Gunnar Rätsch,Heidi Rosenbaum,Joel Rozowsky,Kim Rutherford,P. Ruzanov,Mihail Sarov,Rajkumar Sasidharan,Andrea Sboner,P. Scheid,Eran Segal,Hyunjin Shin,C. Shou,Frank J. Slack,C. Slightam,Richard J.H. Smith,William C. Spencer,Eo Stinson,S. Taing,Teruaki Takasaki,D. Vafeados,Ksenia Voronina,Guilin Wang,Nicole L. Washington,Christina M. Whittle,Beijing Wu,Koon-Kiu Yan,Georg Zeller,Z. Zha,Mei Zhong,Xingliang Zhou,Julie Ahringer,Susan Strome,Kristin C. Gunsalus,Gos Micklem,X. Shirley Liu,Valerie Reinke,Stuart K. Kim,LaDeana W. Hillier,Steven Henikoff,Fabio Piano,Michael Snyder,Lincoln Stein,Jason D. Lieb,Robert H. Waterston +130 more
TL;DR: These studies identified regions of the nematode and fly genomes that show highly occupied targets (or HOT) regions where DNA was bound by more than 15 of the transcription factors analyzed and the expression of related genes were characterized, providing insights into the organization, structure, and function of the two genomes.
Journal ArticleDOI
An assessment of histone-modification antibody quality
Thea A. Egelhofer,Aki Minoda,Aki Minoda,Sarit Klugman,Sarit Klugman,Kyungjoon Lee,P. Kolasinska-Zwierz,Artyom A. Alekseyenko,Ming Sin Cheung,Daniel S. Day,Sarah Gadel,Andrey A. Gorchakov,Tingting Gu,Peter V. Kharchenko,Samantha Kuan,Samantha Kuan,Isabel J. Latorre,Daniela Linder-Basso,Ying Luu,Ying Luu,Que-Minh Ngo,Que-Minh Ngo,Marc D. Perry,Andreas Rechtsteiner,Nicole C. Riddle,Yuri B. Schwartz,Gregory A. Shanower,A. Vielle,Julie Ahringer,Sarah C. R. Elgin,Mitzi I. Kuroda,Vincenzo Pirrotta,Bing Ren,Bing Ren,Susan Strome,Peter J. Park,Gary H. Karpen,Gary H. Karpen,R. David Hawkins,R. David Hawkins,Jason D. Lieb +40 more
TL;DR: The specificity and utility of histone-modification antibodies raised against 57 different histone modifications in Drosophila melanogaster, Caenorhabditis elegans and human cells are tested.
Journal ArticleDOI
Comparative analysis of metazoan chromatin organization
Joshua W. K. Ho,Joshua W. K. Ho,Youngsook L. Jung,Tao Liu,Tao Liu,Burak H. Alver,Soohyun Lee,Kohta Ikegami,Kohta Ikegami,Kyung-Ah Sohn,Kyung-Ah Sohn,Aki Minoda,Aki Minoda,Michael Y. Tolstorukov,Alex Appert,Stephen C. J. Parker,Tingting Gu,Anshul Kundaje,Anshul Kundaje,Anshul Kundaje,Nicole C. Riddle,Nicole C. Riddle,Eric Bishop,Eric Bishop,Thea A. Egelhofer,Sheng'en Shawn Hu,Artyom A. Alekseyenko,Andreas Rechtsteiner,Dalal Asker,Dalal Asker,Jason A. Belsky,Sarah K. Bowman,Q. Brent Chen,Ron A.-J. Chen,Daniel S. Day,Yan Dong,Andréa C. Dosé,Xikun Duan,Charles B. Epstein,Sevinc Ercan,Elise A. Feingold,Francesco Ferrari,Jacob M. Garrigues,Nils Gehlenborg,Nils Gehlenborg,Peter J. Good,Psalm Haseley,Daniel He,Moritz Herrmann,Michael M. Hoffman,Tess E. Jeffers,Tess E. Jeffers,Peter V. Kharchenko,P. Kolasinska-Zwierz,Chitra V. Kotwaliwale,Chitra V. Kotwaliwale,Nischay Kumar,Nischay Kumar,Sasha A. Langley,Sasha A. Langley,Erica Larschan,Isabel J. Latorre,Maxwell W. Libbrecht,Xueqiu Lin,Richard W. Park,Richard W. Park,Michael J. Pazin,Hoang N. Pham,Hoang N. Pham,Hoang N. Pham,Annette Plachetka,Bo Qin,Yuri B. Schwartz,Yuri B. Schwartz,Noam Shoresh,Przemyslaw Stempor,A. Vielle,Chengyang Wang,Christina M. Whittle,Christina M. Whittle,Huiling Xue,Robert E. Kingston,Ju Han Kim,Bradley E. Bernstein,Bradley E. Bernstein,Bradley E. Bernstein,Abby F. Dernburg,Abby F. Dernburg,Abby F. Dernburg,Vincenzo Pirrotta,Mitzi I. Kuroda,William Stafford Noble,Thomas D. Tullius,Manolis Kellis,Manolis Kellis,David M. MacAlpine,Susan Strome,Sarah C. R. Elgin,Xiaole Shirley Liu,Xiaole Shirley Liu,Jason D. Lieb,Julie Ahringer,Gary H. Karpen,Gary H. Karpen,Peter J. Park +104 more
TL;DR: Comparison of combinatorial patterns of histone modifications, nuclear lamina-associated domains, organization of large-scale topological domains, chromatin environment at promoters and enhancers, nucleosome positioning, and DNA replication patterns reveals many conserved features of chromatin organization among the three organisms.
Journal ArticleDOI
Broad chromosomal domains of histone modification patterns in C. elegans
Tao Liu,Andreas Rechtsteiner,Thea A. Egelhofer,A. Vielle,Isabel J. Latorre,Ming Sin Cheung,Sevinc Ercan,Kohta Ikegami,M. Jensen,P. Kolasinska-Zwierz,Heidi Rosenbaum,Hyunjin Shin,S. Taing,Teruaki Takasaki,A. Leonardo Iniguez,Arshad Desai,Abby F. Dernburg,Hiroshi Kimura,Jason D. Lieb,Julie Ahringer,Susan Strome,X. Shirley Liu +21 more
TL;DR: The genome-wide distributions of 19 histone modifications, one histone variant, and eight chromatin-associated proteins in Caenorhabditis elegans embryos and L3 larvae are defined, allowing for in-depth analysis of the organization and deployment of the C. elegans genome during development.
Journal ArticleDOI
The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny.
Andreas Rechtsteiner,Sevinc Ercan,Teruaki Takasaki,T. Phippen,Thea A. Egelhofer,Wenchao Wang,Hiroshi Kimura,Jason D. Lieb,Susan Strome +8 more
TL;DR: It is proposed that MES-4 transmits the memory of gene expression in the parental germ line to offspring and that this memory role is critical for the PGCs to execute a proper germline program.