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Wolfram Höps
Researcher at European Bioinformatics Institute
Publications - 9
Citations - 389
Wolfram Höps is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Genome & Structural variation. The author has an hindex of 4, co-authored 4 publications receiving 101 citations.
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Journal ArticleDOI
Haplotype-resolved diverse human genomes and integrated analysis of structural variation.
Peter Ebert,Peter A. Audano,Qihui Zhu,Bernardo Rodriguez-Martin,David Porubsky,Marc Jan Bonder,Marc Jan Bonder,Arvis Sulovari,Jana Ebler,Weichen Zhou,Rebecca Serra Mari,Feyza Yilmaz,Xuefang Zhao,Xuefang Zhao,PingHsun Hsieh,Joyce V. Lee,Sushant Kumar,Jiadong Lin,Tobias Rausch,Yu Chen,Jingwen Ren,Martin Santamarina,Wolfram Höps,Hufsah Ashraf,Nelson T. Chuang,Xiaofei Yang,Katherine M. Munson,Alexandra P. Lewis,Susan Fairley,Luke J. Tallon,Wayne E. Clarke,Anna O. Basile,Marta Byrska-Bishop,André Corvelo,Uday S. Evani,Tsung Yu Lu,Mark Chaisson,Junjie Chen,Chong Li,Harrison Brand,Harrison Brand,Aaron M. Wenger,Maryam Ghareghani,Maryam Ghareghani,Maryam Ghareghani,William T. Harvey,Benjamin Raeder,Patrick Hasenfeld,Allison A. Regier,Haley J. Abel,Ira M. Hall,Paul Flicek,Oliver Stegle,Oliver Stegle,Mark Gerstein,Jose M. C. Tubio,Zepeng Mu,Yang I. Li,Xinghua Shi,Alex Hastie,Kai Ye,Kai Ye,Zechen Chong,Ashley D. Sanders,Michael C. Zody,Michael E. Talkowski,Michael E. Talkowski,Ryan E. Mills,Scott E. Devine,Charles Lee,Charles Lee,Jan O. Korbel,Tobias Marschall,Evan E. Eichler +73 more
TL;DR: In this article, the authors present 64 assembled haplotypes from 32 diverse human genomes, which integrate all forms of genetic variation, even across complex loci, and identify 107,590 structural variants (SVs), of which 68% were not discovered with short-read sequencing.
Journal ArticleDOI
Recurrent inversion polymorphisms in humans associate with genetic instability and genomic disorders
David Porubsky,Wolfram Höps,Hufsah Ashraf,PingHsun Hsieh,Bernardo Rodriguez-Martin,Feyza Yilmaz,Jana Ebler,Pille Hallast,Flavia Angela Maria Maggiolini,William T. Harvey,Barbara Henning,Peter A. Audano,David Gordon,Peter J.R. Ebert,Patrick Hasenfeld,Eva Benito,Qihui Zhu,Charles Lee,Francesca Antonacci,Matthias Steinrücken,Christine R. Beck,Ashley D. Sanders,Tobias Marschall,Evan E. Eichler,Jan O. Korbel +24 more
TL;DR: In this article , the authors proposed that inversion recurrence results in an elevated number of heterozygous carriers and structural SD diversity, which increases mutability in the population and predisposes specific haplotypes to disease-causing copy number variants.
Journal ArticleDOI
Recurrent Inversion Toggling and Great Ape Genome Evolution
David Porubsky,David Porubsky,Ashley D. Sanders,Wolfram Höps,PingHsun Hsieh,Arvis Sulovari,Ruiyang Li,Ludovica Mercuri,Melanie Sorensen,Shwetha C. Murali,David Gordon,Stuart Cantsilieris,Stuart Cantsilieris,Alex A. Pollen,Mario Ventura,Francesca Antonacci,Tobias Marschall,Jan O. Korbel,Evan E. Eichler +18 more
TL;DR: It is shown that when great ape lineage-specific duplications emerge, they preferentially occur in an inverted orientation compared to that at their ancestral locus, and the X chromosome is most enriched for inversions, on the basis of its size and duplication content.
Journal ArticleDOI
Gene Unprediction with Spurio: A tool to identify spurious protein sequences.
TL;DR: The initial experiments suggest that less than 1% of the proteins in the UniProtKB sequence database are likely to be spurious and that Spurio is able to identify over 60 times more spurious proteins than the AntiFam resource.
Posted ContentDOI
De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation
Peter Ebert,Peter A. Audano,Qihui Zhu,Bernardo Rodriguez-Martin,David Porubsky,Marc Jan Bonder,Marc Jan Bonder,Arvis Sulovari,Jana Ebler,Weichen Zhou,Rebecca Serra Mari,Feyza Yilmaz,Xuefang Zhao,PingHsun Hsieh,Joyce V. Lee,Sushant Kumar,Jiadong Lin,Tobias Rausch,Yu Chen,Jingwen Ren,Martin Santamarina,Wolfram Höps,Hufsah Ashraf,Nelson T. Chuang,Xiaofei Yang,Katherine M. Munson,Alexandra P. Lewis,Susan Fairley,Luke J. Tallon,Wayne E. Clarke,Anna O. Basile,Marta Byrska-Bishop,André Corvelo,Mark Chaisson,Junjie Chen,Chong Li,Harrison Brand,Aaron M. Wenger,Maryam Ghareghani,Maryam Ghareghani,William T. Harvey,Benjamin Raeder,Patrick Hasenfeld,Allison Regier,Haley J. Abel,Ira M. Hall,Paul Flicek,Oliver Stegle,Mark Gerstein,Jose M. C. Tubio,Zepeng Mu,Yang I. Li,Xinghua Shi,Alex Hastie,Kai Ye,Zechen Chong,Ashley D. Sanders,Michael C. Zody,Michael E. Talkowski,Ryan E. Mills,Scott E. Devine,Charles Lee,Jan O. Korbel,Tobias Marschall,Evan E. Eichler,Evan E. Eichler +65 more
TL;DR: This resource enables reliable graph-based genotyping from short reads of up to 50,340 SVs, resulting in the identification of 1,525 expression quantitative trait loci (SV-eQTLs) as well as SV candidates for adaptive selection within the human population.