Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov.
Miguel A. Martinez,Ben J. Woodcroft,Julio C. Ignacio Espinoza,Ahmed A. Zayed,Caitlin M. Singleton,Joel A. Boyd,Yueh-Fen Li,Samuel O. Purvine,Heather Maughan,S. B. Hodgkins,Darya Anderson,Maya R. Sederholm,Ben Temperton,Benjamin Bolduc,Scott R. Saleska,Gene W. Tyson,Virginia I. Rich,Virginia I. Rich +17 more
TLDR
These findings establish the SMCs as four novel phenotypically and ecologically distinct species within a single novel genus, distinct from C. exile clade at the phylum level, and part of a novel cold-habitat phylum for an understudied, globally-distributed superphylum encompassing the Caldiserica.About:
This article is published in Systematic and Applied Microbiology.The article was published on 2019-01-01 and is currently open access. It has received 18 citations till now. The article focuses on the topics: Caldisericum.read more
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Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria).
TL;DR: Unique presence of key pre-neomuran characters favours Planctobacteria only as ancestral to neomura, which apparently arose by coevolutionary repercussions (explained here in detail, including RP replacement) of simultaneous outer membrane and murein loss.
Journal ArticleDOI
Microbiome assembly in thawing permafrost and its feedbacks to climate
Jessica G. Ernakovich,Robyn A. Barbato,Virginia I. Rich,Christina Schädel,Rebecca E. Hewitt,S.J. Doherty,Emily D. Whalen,Benjamin W. Abbott,Jiří Bárta,Christina Biasi,Chris L. Chabot,Jenni Hultman,Christian Knoblauch,Maggie C. Y. Lau Vetter,Mary-Cathrine Leewis,Susanne Liebner,R. Mackeprang,Tullis C. Onstott,Andreas Richter,Ursel M. E. Schütte,Henri M.P. Siljanen,Neslihan Taş,Ina Timling,Tatiana A. Vishnivetskaya,Mark P. Waldrop,Matthias Winkel +25 more
TL;DR: In this paper , the authors propose Assembly Theory to better understand thaw-mediated microbial community changes and the implications for community function and climate feedbacks, and propose that the contribution of stochastic and deterministic processes to post-thaw microbiome assembly depends on the characteristics of the thaw disturbance.
Journal ArticleDOI
Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales.
Laura Zinke,Paul N. Evans,Christian Santos-Medellín,Alena L. Schroeder,Donovan H. Parks,Ruth K. Varner,Virginia I. Rich,Gene W. Tyson,Joanne B. Emerson +8 more
TL;DR: Comparative genomic analysis of 12 Thermoplasmata metagenome-assembled genomes basal to the Methanomassiliicoccales shows that these microorganisms do not encode the genes required for methanogenesis, and suggests that meethanogenesis was laterally acquired by an ancestor of the Methaplasmatota.
Posted ContentDOI
Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales
Laura Zinke,Paul N. Evans,Alena L. Schroeder,Donovan H. Parks,Ruth K. Varner,Virginia I. Rich,Gene W. Tyson,Joanne B. Emerson +7 more
TL;DR: Through comparative genomic analysis of 12 Thermoplasmata metagenome-assembled genomes, it is shown that these microorganisms do not encode the genes required for methanogenesis, which suggests that this metabolism may have been laterally acquired by an ancestor of the order Methanomassiliicoccales.
Journal ArticleDOI
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research
Benjamin Bolduc,S. B. Hodgkins,Ruth K. Varner,Patrick M. Crill,C. K. McCalley,Jeffrey P. Chanton,Gene W. Tyson,William J. Riley,Michael W. Palace,Melissa B. Duhaime,Moira Hough,Saleska,Matthew B. Sullivan,Virginia I. Rich,Stephen E. Frolking,C Li,Eoin L. Brodie,D Anderson,H Axén,K Bennett,S Dominguez,Jessica G. Ernakovich,F Fahnestock,A. Garnello,Joachim Jansen,Robert M. Jones,Eh Kim,T. Logan,T Marcus,Samantha McCabe,Amelia McClure,Rhiannon Mondav,Apryl L. Perry,N. Raab,K Solheim,P Tansey,Gareth Trubl,Martin Wik,Rachel M. Wilson,Joel A. Boyd,S. A. Burke,KY Chang,William T. Cooper,A Cory,Dylan R. Cronin,K. Crossen,J Deng,Ellen Dorrepaal,Joanne B. Emerson,Paul N. Evans,Robert D. Hoelzle,B Huettel,Bonnie L. Hurwitz,U Karaoz,J Kolengowski,F Li,M Martinez,I Morales,D Nguyen,Clarice R. Perryman,Caitlin M. Singleton,M. M. Tfaily,Nathan C. VerBerkmoes,Vining,Richard Wehr,K Winters,Ben J. Woodcroft,G Zane,Ahmed A. Zayed,R Braswell,Eleanor E. Campbell,J. L. DelGreco,J Fisk,C. Herrick,Louis J. Lamit,Joanne H. Shorter,F. Sullivan,N Torbick,B Ziniti +78 more
TL;DR: The IsoGenieDB is a public and private data infrastructure designed to store and query data generated by the Iso Genie Project, a ~10 year DOE-funded project focused on discovering ecosystem climate feedbacks in a thawing permafrost landscape, and is being expanded to cover the NASA-funded A2A project.
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