Journal ArticleDOI
Genome-wide discovery of SNPs in candidate genes related to production and fertility traits in Sahiwal cattle
M R Vineeth,T. Surya,Jayakumar Sivalingam,Anshuman Kumar,Saket Kumar Niranjan,S. P. Dixit,Karan Veer Singh,M. S. Tantia,Ishwar Dayal Gupta +8 more
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TLDR
The SNPs identified in this study will facilitate further insights on tropical adaptation, domestication history and population structure of indigenous cattle and serve as useful genetic tools, in the quest for phenotype modifying nucleotide change and help in designing appropriate genetic improvement programs.Citations
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Molecular dissection of a quantitative trait locus: a phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition.
Wouter Coppieters,Sarah C. Blott,Michel Georges,Richard J. Spelman,Latifa Karim,Frédéric Farnir,Anne Lisbeth Schmidt,Bernard Grisart,Anne Cornet,Sirja Moisio,Patricia Simon-Assmann,Nadine Cambisano,Sharon A Küntzel,Talitha C. Ford,Chang-Joo Kim,Jerry Wong,Russell G. Snell,Gwang Sik Kim,Dave Johnson,Paulette Berzi,Johanna Vilkki +20 more
TL;DR: Using a denser chromosome 20 marker map and exploiting linkage disequilibrium using two distinct approaches, strong evidence is provided that a chromosome segment including the gene coding for the growth hormone receptor accounts for at least part of the chromosome 20 QTL effect.
Distribution and location of genetic effects for dairy traits.
John B. Cole,Paul M. VanRaden,Jeffrey R. O'Connell,C.P. Van Tassell,Tad S. Sonstegard,Robert D. Schnabel,Jeremy F. Taylor,G.R. Wiggans,J. D. Sattler +8 more
TL;DR: Results validate quantitative genetic assumptions that most traits are due to the contributions of a large number of genes of small additive effect, rather than support the finite locus model.
Discovery of single nucleotide polymorphisms incandidate genes associated with fertility andproduction traits in Holstein cattle
TL;DR: In this article, single nucleotide polymorphisms (SNPs) for specific genes involved in reproduction might improve reliability of genomic estimates for low-heritability traits, such as daughter pregnancy rate (DPR).
Journal ArticleDOI
Comparative Signatures of Selection Analyses Identify Loci Under Positive Selection in the Murrah Buffalo of India.
Shiv K. Tyagi,Arnav Mehrotra,Akansha Singh,Amit Kumar,Triveni Dutt,Bishnu Prasad Mishra,Ashwni Kumar Pandey +6 more
TL;DR: In this article, a selection signature analysis revealed six regions in Murrah, which were identified in more than one pair-wise comparison through both XP-EHH and F ST analyses.
Journal ArticleDOI
Trajectory of livestock genomics in South Asia: A comprehensive review.
Manjit Panigrahi,Harshit Kumar,K. Saravanan,Divya Rajawat,Sonali Sonejita Nayak,Kanika Ghildiyal,Kaiho Kaisa,Subhashree Parida,Bharat Bhushan,Triveni Dutt +9 more
TL;DR: In this article , the authors present a comprehensive analysis of the dichotomy in the South Asian livestock sector and argue that a realistic approach to genomics in livestock can ensure long-term genetic advancements.
References
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Book
Molecular Cloning: A Laboratory Manual
TL;DR: Molecular Cloning has served as the foundation of technical expertise in labs worldwide for 30 years as mentioned in this paper and has been so popular, or so influential, that no other manual has been more widely used and influential.
Journal ArticleDOI
The Sequence Alignment/Map format and SAMtools
Heng Li,Bob Handsaker,Alec Wysoker,T. J. Fennell,Jue Ruan,Nils Homer,Gabor T. Marth,Gonçalo R. Abecasis,Richard Durbin +8 more
TL;DR: SAMtools as discussed by the authors implements various utilities for post-processing alignments in the SAM format, such as indexing, variant caller and alignment viewer, and thus provides universal tools for processing read alignments.
Journal ArticleDOI
Fast gapped-read alignment with Bowtie 2
TL;DR: Bowtie 2 combines the strengths of the full-text minute index with the flexibility and speed of hardware-accelerated dynamic programming algorithms to achieve a combination of high speed, sensitivity and accuracy.
Book
Molecular cloning : a laboratory manual
Joseph Sambrook,David W. Russell +1 more
TL;DR: The content has been entirely recast to include nucleic-acid based methods selected as the most widely used and valuable in molecular and cellular biology laboratories.
Journal ArticleDOI
AFLP: a new technique for DNA fingerprinting.
Pieter Vos,René Cornelis Josephus Hogers,Marjo Bleeker,Martin Reijans,Theo van de Lee,Miranda Hornes,Adrie Friters,Jerina Pot,Johan Paleman,Martin Kuiper,Marc Zabeau +10 more
TL;DR: The AFLP technique provides a novel and very powerful DNA fingerprinting technique for DNAs of any origin or complexity that allows the specific co-amplification of high numbers of restriction fragments.
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Discovery, characterization and validation of single nucleotide polymorphisms within 206 bovine genes that may be considered as candidate genes for beef production and quality.
John L. Williams,John L. Williams,Susana Dunner,Alessio Valentini,Raffaele Mazza,Valérie Amarger,Valérie Amarger,M.L. Checa,Alessandra Crisà,N. Razzaq,Didier Delourme,Didier Delourme,Frédéric Grandjean,Frédéric Grandjean,Cinzia Marchitelli,D. Domínguez García,R. Perez Gomez,Riccardo Negrini,P. Ajmone Marsan,Hubert Levéziel,Hubert Levéziel +20 more