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Genome-wide identification and expression analysis of calcium-dependent protein kinase in maize.

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TLDR
A genome-wide analysis of the CDPK gene family in maize for the first time is presented and expression analyses suggested that maize C DPK genes are important components of maize development and multiple transduction pathways.
Abstract
Calcium-dependent protein kinases (CDPKs) have been shown to play important roles in various physiological processes, including plant growth and development, abiotic and biotic stress responses and plant hormone signaling in plants. In this study, we performed a bioinformatics analysis of the entire maize genome and identified 40 CDPK genes. Phylogenetic analysis indicated that 40 ZmCPKs can be divided into four groups. Most maize CDPK genes exhibited different expression levels in different tissues and developmental stages. Twelve CDPK genes were selected to respond to various stimuli, including salt, drought and cold, as well as ABA and H2O2. Expression analyses suggested that maize CDPK genes are important components of maize development and multiple transduction pathways. Here, we present a genome-wide analysis of the CDPK gene family in maize for the first time, and this genomic analysis of maize CDPK genes provides the first step towards a functional study of this gene family in maize.

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Journal ArticleDOI

Genome-wide Identification and Expression Analysis of the CDPK Gene Family in Grape, Vitis spp.

TL;DR: A genome-wide analysis of the 12X grape genome provided significant insights into the evolution and function of grape CDPKs and a framework for future investigation of grapeCDPK genes.
Journal ArticleDOI

Genome-wide investigation of the AP2/ERF gene family in tartary buckwheat ( Fagopyum Tataricum )

TL;DR: A comprehensive analysis of AP2/ERF gene expression patterns in different tissues and fruit development stages by quantitative real-time PCR (qRT-PCR) showed that they played an important role in the growth and development of tartary buckwheat, and genes that might regulate flower and Fruit development were preliminarily identified.
Journal ArticleDOI

ZmCPK1, a calcium-independent kinase member of the Zea mays CDPK gene family, functions as a negative regulator in cold stress signalling.

TL;DR: The results identify ZmCPK1 as a negative regulator of cold stress signalling in maize as well as heterologous overexpression of Zm CPK1 in Arabidopsis thaliana yielded plants with altered acclimation-induced frost tolerance.
References
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Journal ArticleDOI

Salt and drought stress signal transduction in plants

TL;DR: Salt and drought stress signal transduction consists of ionic and osmotic homeostasis signaling pathways, detoxification (i.e., damage control and repair) response pathways, and pathways for growth regulation.
Journal ArticleDOI

The B73 Maize Genome: Complexity, Diversity, and Dynamics

Patrick S. Schnable, +159 more
- 20 Nov 2009 - 
TL;DR: The sequence of the maize genome reveals it to be the most complex genome known to date and the correlation of methylation-poor regions with Mu transposon insertions and recombination and how uneven gene losses between duplicated regions were involved in returning an ancient allotetraploid to a genetically diploid state is reported.
Journal ArticleDOI

Plant salt tolerance

TL;DR: A recently discovered halophytic plant species, Thellungiella halophila, now promises to help in the detection of new tolerance determinants and operating pathways in a model system that is not limited to Arabidopsis traits or ecotype variations.
Journal ArticleDOI

An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data Sets

TL;DR: The eFP Browser software is easily adaptable to microarray or other large-scale data sets from any organism and thus should prove useful to a wide community for visualizing and interpreting these data sets for hypothesis generation.
Journal ArticleDOI

Cell Signaling during Cold, Drought, and Salt Stress

TL;DR: Low temperature, drought, and high salinity are common stress conditions that adversely affect plant growth and crop production and understand the cellular and molecular responses of plants to environmental stress.
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