Growth promotion-related miRNAs in Oncidium orchid roots colonized by the endophytic fungus Piriformospora indica.
Wei Ye,Chin-Hui Shen,Yuling Lin,Peng-Jen Chen,Xuming Xu,Ralf Oelmüller,Kai-Wun Yeh,Zhongxiong Lai +7 more
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TLDR
This study revealed that growth stimulation of the Oncidium orchid after colonization by P. indica includes an intricate network of miRNAs and their targets, which resembles previous findings on Chinese cabbage.Citations
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Piriformospora indica: Potential and Significance in Plant Stress Tolerance.
Sarvajeet Singh Gill,Ritu Gill,Dipesh Kumar Trivedi,Naser A. Anjum,Krishna K. Sharma,Mohammed W. Ansari,Abid Ali Ansari,Atul Kumar Johri,Ram Prasad,Eduarda Pereira,Ajit Varma,Narendra Tuteja +11 more
TL;DR: The outcome of the recent literature appraised herein will help to understand the physiological and molecular bases of mechanisms underlying P. indica-crop plant mutual relationship in both achieving new insights into crop protection/improvement as well as in sustainable agriculture production.
Journal ArticleDOI
Sebacinales – one thousand and one interactions with land plants
TL;DR: This review discusses the genomic traits possibly associated with transitions from saprotrophy to endophytism and to mycorrhizal nutrition within one fungal order of Sebacinales and proposes the name Serendipitaceae for this family.
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Role of Phytohormones in Piriformospora indica-Induced Growth Promotion and Stress Tolerance in Plants: More Questions Than Answers.
TL;DR: The roles of the phytohormones (auxins, cytokinin, gibberellins, abscisic acid, ethylene, salicylic acid, jasmonates, and brassinosteroids) in the interaction of P. indica with higher plant species are discussed, and available data with those from other microorganisms interacting with roots are compared.
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Non-pathogenic Rhizobium radiobacter F4 deploys plant beneficial activity independent of its host Piriformospora indica
Stefanie P. Glaeser,Jafargholi Imani,Ibrahim Alabid,Huijuan Guo,Neelendra Kumar,Peter Kämpfer,Martin Hardt,Jochen Blom,Alexander Goesmann,Michael Rothballer,Anton Hartmann,Karl-Heinz Kogel +11 more
TL;DR: RrF4 is an efficient plant growth-promoting bacterium that colonizes plant roots without host preference and forms aggregates of attached cells and dense biofilms at the root surface of maturation zones and shows a high degree of similarity to the plant pathogenic R. radiobacter.
References
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MicroRNAs: Genomics, Biogenesis, Mechanism, and Function
TL;DR: Although they escaped notice until relatively recently, miRNAs comprise one of the more abundant classes of gene regulatory molecules in multicellular organisms and likely influence the output of many protein-coding genes.
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RNA silencing in plants
TL;DR: Diverse biological roles of these pathways have been established, including defence against viruses, regulation of gene expression and the condensation of chromatin into heterochromatin, and the full extent of this functional diversity in genetic and epigenetic mechanisms of genome control is investigated.
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Origin, biogenesis, and activity of plant microRNAs.
TL;DR: Current advances in understanding of the origin, biogenesis, and mode of action of plant miRNAs are discussed and comparisons with their metazoan counterparts are drawn.
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The endophytic fungus Piriformospora indica reprograms barley to salt-stress tolerance, disease resistance, and higher yield
Frank Waller,Beate Achatz,Beate Achatz,Helmut Baltruschat,József Fodor,Katja Becker,Marina Fischer,Tobias Heier,Ralph Hückelhoven,Christina Neumann,Diter von Wettstein,Philipp Franken,Karl-Heinz Kogel +12 more
TL;DR: The potential of Piriformospora indica to induce resistance to fungal diseases and tolerance to salt stress in the monocotyledonous plant barley is reported on.
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A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
Marie-Agnès Dillies,Andrea Rau,Julie Aubert,Christelle Hennequet-Antier,Marine Jeanmougin,Nicolas Servant,Céline Keime,Guillemette Marot,David Castel,Jordi Estellé,Gregory Guernec,Bernd Jagla,Luc Jouneau,Denis Laloë,Caroline Le Gall,Brigitte Schaeffer,Stéphane Le Crom,Mickaël Guedj,Florence Jaffrézic +18 more
TL;DR: This work focuses on a comprehensive comparison of seven recently proposed normalization methods for the differential analysis of RNA-seq data, with an emphasis on the use of varied real and simulated datasets involving different species and experimental designs to represent data characteristics commonly observed in practice.