Progress in soybean functional genomics over the past decade.
Min Zhang,Shu-Lin Liu,Zhao Wang,Yaqin Yuan,Zhifang Zhang,Qianjin Liang,Xia Yang,Zongbiao Duan,Yucheng Liu,Fanjiang Kong,Baohui Liu,Bo Ren,Zhixi Tian +12 more
TLDR
In this paper, the authors reviewed the research progress in soybean omics (genomics, transcriptomics, epigenomics and proteomics), germplasm development (germplasm resources and databases), gene discovery (genes that are responsible for important soybean traits including yield, flowering and maturity, seed quality, stress resistance, nodulation and domestication) and transformation technology during the past decade.Abstract:
Soybean is one of the most important oilseed and fodder crops. Benefiting from the efforts of soybean breeders and the development of breeding technology, large number of germplasm has been generated over the last 100 years. Nevertheless, soybean breeding needs to be accelerated to meet the needs of a growing world population, to promote sustainable agriculture and to address future environmental changes. The acceleration is highly reliant on the discoveries in gene functional studies. The release of the reference soybean genome in 2010 has significantly facilitated the advance in soybean functional genomics. Here, we review the research progress in soybean omics (genomics, transcriptomics, epigenomics and proteomics), germplasm development (germplasm resources and databases), gene discovery (genes that are responsible for important soybean traits including yield, flowering and maturity, seed quality, stress resistance, nodulation and domestication) and transformation technology during the past decade. At the end, we also briefly discuss current challenges and future directions.read more
Citations
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Journal ArticleDOI
Natural allelic variation of GmST05 controlling seed size and quality in soybean
Zongbiao Duan,Min Zhang,Zhifang Zhang,Shan Liang,Lei Fan,Xia Yang,Yaqin Yuan,Yi Pan,Guoan Zhou,Shulin Liu,Zhixi Tian +10 more
TL;DR: In this article , a genome-wide association study of over 1800 soybean accessions was conducted, and it was found that natural allelic variation at GmST05 (Seed Thickness 05) predominantly controlled seed thickness and size in soybean germplasm.
Journal ArticleDOI
Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics
Tao Yang,Rong Liu,Yingfeng Luo,Songnian Hu,Dong Wang,Chenyu Wang,Manish K. Pandey,Song Ge,Quan-le Xu,Nana Li,Guan Li,Yuning Huang,Rachit K. Saxena,Yishan Ji,Mengwei Li,Xin Yan,Yujiao Liu,Xue-Jun Wang,Chao Xiang,Rajeev K. Varshney,Hanfeng Ding,Sheng Han Gao,Xuxiao Zong +22 more
TL;DR: In this paper , a de novo assembly and annotation of a pea cultivar ZW6 with contig N50 of 8.98 Mb was reported, which features a 243-fold increase in contig length and evident improvements in the continuity and quality of sequence in complex repeat regions compared with the existing one.
Journal ArticleDOI
Transcriptomic and Metabolomic Analysis of Seedling-Stage Soybean Responses to PEG-Simulated Drought Stress
TL;DR: In this article , RNA-seq technology and ultra-performance liquid chromatography-tandem mass spectrometry were used to analyze the transcriptome and metabolome changes in soybean leaves at the seedling stage under drought stress.
Journal ArticleDOI
GenoBaits Soy40K: a highly flexible and low-cost SNP array for soybean studies
Yucheng Liu,Shulin Liu,Zhifang Zhang,Lingbin Ni,Xingming Chen,Yunxia Ge,Guoan Zhou,Zhixi Tian +7 more
Journal ArticleDOI
Natural variation of Dt2 determines branching in soybean
Qianjin Liang,Li-yun Chen,Xia Yang,Hui YangH. Yang,Shulin Liu,Kunyuan Kou,Lei Fan,Zhifang Zhang,Zongbiao Duan,Yaqin Yuan,Shan Liang,Yucheng Liu,Guoan Zhou,Min Zhang,Fanjiang Kong,Zhixi Tian +15 more
TL;DR: Zhang et al. as discussed by the authors identified one predominant association locus on chromosome 18 that confers soybean branch number in the natural population through genome-wide association study, which may facilitate the breeding of high-yield soybean varieties.
References
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