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The SIESTA method for ab initio order-N materials simulation

TLDR
In this paper, a selfconsistent density functional method using standard norm-conserving pseudopotentials and a flexible, numerical linear combination of atomic orbitals basis set, which includes multiple-zeta and polarization orbitals, was developed and implemented.
Abstract
We have developed and implemented a selfconsistent density functional method using standard norm-conserving pseudopotentials and a flexible, numerical linear combination of atomic orbitals basis set, which includes multiple-zeta and polarization orbitals. Exchange and correlation are treated with the local spin density or generalized gradient approximations. The basis functions and the electron density are projected on a real-space grid, in order to calculate the Hartree and exchange-correlation potentials and matrix elements, with a number of operations that scales linearly with the size of the system. We use a modified energy functional, whose minimization produces orthogonal wavefunctions and the same energy and density as the Kohn-Sham energy functional, without the need for an explicit orthogonalization. Additionally, using localized Wannier-like electron wavefunctions allows the computation time and memory required to minimize the energy to also scale linearly with the size of the system. Forces and stresses are also calculated efficiently and accurately, thus allowing structural relaxation and molecular dynamics simulations.

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Periodic Pulay method for robust and efficient convergence acceleration of self-consistent field iterations

TL;DR: A simple generalization of DIIS is proposed in which Pulay extrapolation is performed at periodic intervals rather than on every self-consistent field iteration, and linear mixing is performed on all other iterations.
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When noncovalent interactions are stronger than covalent bonds: Bilayer graphene doped with second row atoms, aluminum, silicon, phosphorus and sulfur

TL;DR: In this article, the authors investigate bilayer graphene doped with second-row atoms using the LDA, M06-L, and VDW-DF functionals and show that it is feasible to tune the electronic properties, and the interlayer-interaction energy varying the type or amount of second row atoms.
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Strain and electric field induced electronic properties of two-dimensional hybrid bilayers of transition-metal dichalcogenides

TL;DR: In this paper, the authors investigated the effect of tensile strain and electric field on the electronic properties of two-dimensional bilayer hetero structures of transition-metal dichalcogenides (i.e., MX2-M′X′2 with (M, M′) = Mo, W; X, X′ = S, Se).
Journal ArticleDOI

Interlayer-State-Coupling Dependent Ultrafast Charge Transfer in MoS2/WS2 Bilayers.

TL;DR: The results establish the interlayer stacking as an effective freedom to control ultrafast charge transfer dynamics in 2D heterostructures and facilitate their future applications in optoelectronics and light harvesting.
Journal ArticleDOI

Free energy calculations with non-equilibrium methods: applications of the Jarzynski relationship

TL;DR: In this article, the authors introduce the Jarzynski relationship between the distribution of non-equilibrium work values and the corresponding equilibrium free energy differences, and discuss three different applications by their group: mechanical unfolding of peptides, mixed quantum/classical free energy calculations in enzymes, and ligand escape pathways.
References
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Journal ArticleDOI

Generalized Gradient Approximation Made Simple

TL;DR: A simple derivation of a simple GGA is presented, in which all parameters (other than those in LSD) are fundamental constants, and only general features of the detailed construction underlying the Perdew-Wang 1991 (PW91) GGA are invoked.
Journal ArticleDOI

Special points for brillouin-zone integrations

TL;DR: In this article, a method for generating sets of special points in the Brillouin zone which provides an efficient means of integrating periodic functions of the wave vector is given, where the integration can be over the entire zone or over specified portions thereof.
Journal ArticleDOI

Self-Consistent Equations Including Exchange and Correlation Effects

TL;DR: In this paper, the Hartree and Hartree-Fock equations are applied to a uniform electron gas, where the exchange and correlation portions of the chemical potential of the gas are used as additional effective potentials.
Book

Classical Electrodynamics

Book

Introduction to solid state physics

TL;DR: In this paper, the Hartree-Fock Approximation of many-body techniques and the Electron Gas Polarons and Electron-phonon Interaction are discussed.
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