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BookDOI

The structure and dynamics of networks

TLDR
The degree distribution, twopoint correlations, and clustering are the studied topological properties and an evolution of networks is studied to shed light on the influence the dynamics has on the network topology.
Abstract
Networks have become a general concept to model the structure of arbitrary relationships among entities. The framework of a network introduces a fundamentally new approach apart from ‘classical’ structures found in physics to model the topology of a system. In the context of networks fundamentally new topological effects can emerge and lead to a class of topologies which are termed ‘complex networks’. The concept of a network successfully models the static topology of an empirical system, an arbitrary model, and a physical system. Generally networks serve as a host for some dynamics running on it in order to fulfill a function. The question of the reciprocal relationship among a dynamical process on a network and its topology is the context of this Thesis. This context is studied in both directions. The network topology constrains or enhances the dynamics running on it, while the reciprocal interaction is of the same importance. Networks are commonly the result of an evolutionary process, e.g. protein interaction networks from biology. Within such an evolution the dynamics shapes the underlying network topology with respect to an optimal achievement of the function to perform. Answering the question what the influence on a dynamics of a particular topological property has requires the accurate control over the topological properties in question. In this Thesis the degree distribution, twopoint correlations, and clustering are the studied topological properties. These are motivated by the ubiquitous presence and importance within almost all empirical networks. An analytical framework to measure and to control such quantities of networks along with numerical algorithms to generate them is developed in a first step. Networks with the examined topological properties are then used to reveal their impact on two rather general dynamics on networks. Finally, an evolution of networks is studied to shed light on the influence the dynamics has on the network topology.

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Citations
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Journal ArticleDOI

Fast unfolding of communities in large networks

TL;DR: This work proposes a heuristic method that is shown to outperform all other known community detection methods in terms of computation time and the quality of the communities detected is very good, as measured by the so-called modularity.
Journal ArticleDOI

Fast unfolding of communities in large networks

TL;DR: In this paper, the authors proposed a simple method to extract the community structure of large networks based on modularity optimization, which is shown to outperform all other known community detection methods in terms of computation time.
Journal ArticleDOI

Finding community structure in networks using the eigenvectors of matrices

TL;DR: A modularity matrix plays a role in community detection similar to that played by the graph Laplacian in graph partitioning calculations, and a spectral measure of bipartite structure in networks and a centrality measure that identifies vertices that occupy central positions within the communities to which they belong are proposed.
Journal ArticleDOI

Maps of random walks on complex networks reveal community structure

TL;DR: An information theoretic approach is introduced that reveals community structure in weighted and directed networks of large-scale biological and social systems and reveals a directional pattern of citation from the applied fields to the basic sciences.
Journal ArticleDOI

Network Medicine: A Network-Based Approach to Human Disease

TL;DR: Advances in this direction are essential for identifying new disease genes, for uncovering the biological significance of disease-associated mutations identified by genome-wide association studies and full-genome sequencing, and for identifying drug targets and biomarkers for complex diseases.
References
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TL;DR: Simple models of networks that can be tuned through this middle ground: regular networks ‘rewired’ to introduce increasing amounts of disorder are explored, finding that these systems can be highly clustered, like regular lattices, yet have small characteristic path lengths, like random graphs.
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The Logic of Animal Conflict

TL;DR: Game theory and computer simulation analyses show, however, that a “limited war” strategy benefits individual animals as well as the species.
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Stochastic Processes in Physics and Chemistry

D Sherrington
- 01 Apr 1983 - 
TL;DR: Van Kampen as mentioned in this paper provides an extensive graduate-level introduction which is clear, cautious, interesting and readable, and could be expected to become an essential part of the library of every physical scientist concerned with problems involving fluctuations and stochastic processes.
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A critical point for random graphs with a given degree sequence

TL;DR: It is shown that if Σ i(i - 2)λi > 0, then such graphs almost surely have a giant component, while if λ0, λ1… which sum to 1, then almost surely all components in such graphs are small.
Journal ArticleDOI

Scale-free networks provide a unifying framework for the emergence of cooperation.

TL;DR: It is found that, whenever individuals interact following networks of contacts generated via growth and preferential attachment, cooperation becomes the dominating trait throughout the entire range of parameters of both games, as such providing a unifying framework for the emergence of cooperation.