Vegan : community ecology package. R package version 1.17-9

Open Access

Vegan : community ecology package. R package version 1.17-9

Jari Oksanen

About:

The article was published on 2007-01-01 and is currently open access. It has received 10427 citations till now.

Citations

PDF

Open Access

More filters

Journal ArticleDOI

phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data.

Paul J. McMurdie, +1 more

- 22 Apr 2013 -

PLOS ONE

TL;DR: The phyloseq project for R is a new open-source software package dedicated to the object-oriented representation and analysis of microbiome census data in R, which supports importing data from a variety of common formats, as well as many analysis techniques.

...read moreread less

Journal ArticleDOI

Picante: R tools for integrating phylogenies and ecology

Steven W. Kembel, +7 more

- 01 Jun 2010 -

Bioinformatics

TL;DR: Picante is a software package that provides a comprehensive set of tools for analyzing the phylogenetic and trait diversity of ecological communities and performs tests for phylogenetic signal in trait distributions, community structure and species interactions.

...read moreread less

Journal ArticleDOI

Partitioning the turnover and nestedness components of beta diversity

Andrés Baselga

- 01 Jan 2010 -

Global Ecology and Biogeography

TL;DR: In this paper, a unified framework for the assessment of beta diversity, disentangling the contribution of spatial turnover and nestedness to beta-diversity patterns, is provided, which is crucial for our understanding of central biogeographic, ecological and conservation issues.

...read moreread less

Journal ArticleDOI

Waste not, want not: why rarefying microbiome data is inadmissible.

Paul J. McMurdie, +1 more

- 03 Apr 2014 -

PLOS Computational Biology

TL;DR: It is advocated that investigators avoid rarefying altogether and supported statistical theory is provided that simultaneously accounts for library size differences and biological variability using an appropriate mixture model.

...read moreread less

Journal ArticleDOI

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction.

Zhian N. Kamvar, +2 more

- 04 Mar 2014 -

PeerJ

TL;DR: The R package poppr is developed providing unique tools for analysis of data from admixed, clonal, mixed, and/or sexual populations, and functions for genotypic diversity and clone censoring are specific for clonal populations.

...read moreread less