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Adriana Muñoz
Researcher at University of Ottawa
Publications - 15
Citations - 711
Adriana Muñoz is an academic researcher from University of Ottawa. The author has contributed to research in topics: Genome & Contig. The author has an hindex of 7, co-authored 15 publications receiving 580 citations. Previous affiliations of Adriana Muñoz include University of Maryland, College Park & University of Alberta.
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Journal ArticleDOI
The coffee genome provides insight into the convergent evolution of caffeine biosynthesis
Lorenzo Carretero-Paulet,Alexis Dereeper,Gaëtan Droc,Romain Guyot,Marco Pietrella,Chunfang Zheng,Adriana Alberti,François Anthony,G. Aprea,Jean-Marc Aury,Pascal Bento,Maria Bernard,Stéphanie Bocs,Claudine Campa,Alberto Cenci,Alberto Cenci,Marie Christine Combes,Dominique Crouzillat,Corinne Da Silva,Loretta Daddiego,Fabien De Bellis,Stéphane Dussert,Olivier Garsmeur,Thomas Gayraud,Valentin Guignon,Katharina Jahn,Katharina Jahn,Véronique Jamilloux,Thierry Joët,Karine Labadie,Tianying Lan,Tianying Lan,Julie Leclercq,Maud Lepelley,Thierry Leroy,Leiting Li,Pablo Librado,Loredana Lopez,Adriana Muñoz,Adriana Muñoz,Benjamin Noel,Alberto Pallavicini,Gaetano Perrotta,Valérie Poncet,David Pot,Priyono,Michel Rigoreau,Mathieu Rouard,Julio Rozas,Christine Tranchant-Dubreuil,Robert VanBuren,Qiong Zhang,Alan Carvalho Andrade,Xavier Argout,Benoît Bertrand,Alexandre de Kochko,Giorgio Graziosi,Giorgio Graziosi,Robert J Henry,Jayarama,Ray Ming,Chifumi Nagai,Steve Rounsley,David Sankoff,Giovanni Giuliano,Victor A. Albert,Patrick Wincker,Patrick Wincker,Patrick Wincker,Philippe Lashermes +69 more
TL;DR: The Coffea canephora (coffee) genome was sequenced and identified a conserved gene order, and comparative analyses of caffeine NMTs demonstrate that these genes expanded through sequential tandem duplications independently of genes from cacao and tea, suggesting that caffeine in eudicots is of polyphyletic origin.
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Scaffold filling, contig fusion and comparative gene order inference.
TL;DR: The algorithm solves the comparison of genomes with 18,300 genes, including 4500 missing from one genome, in less than a minute on a MacBook, putting virtually all genomes within range of the method.
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Tigukat: a uniform behavioral objectbase management system
TL;DR: The TIGUKAT objectbase management system, which is under development at the Laboratory for Database Systems Research at the University of Alberta, has a novel object model, whose identifying characteristics include a purely behavioral semantics and a uniform approach to objects.
Journal ArticleDOI
Rates of contributory de novo mutation in high and low-risk autism families.
Seungtai Yoon,Adriana Muñoz,Boris Yamrom,Yoon-ha Lee,Peter Andrews,Steven Marks,Zihua Wang,Catherine Reeves,Lara Heermans Winterkorn,Abba M. Krieger,Andreas Buja,Kith Pradhan,Michael Ronemus,Kristin K. Baldwin,Kristin K. Baldwin,Dan Levy,Michael Wigler,Ivan Iossifov +17 more
TL;DR: In this paper, the authors report on findings from whole genome sequence (WGS) of both simplex and multiplex families from the Simons Simplex Collection (SSC) and the Autism Genetic Resource Exchange (AGRE) and find that the contribution of de novo mutation in multiplex is significantly smaller than the contribution in simplex.
Journal ArticleDOI
Rearrangement Phylogeny of Genomes in Contig Form
Adriana Muñoz,David Sankoff +1 more
TL;DR: This work proposes to use the contigs directly in the rearrangement algorithms as if they were chromosomes, while making a number of corrections, e.g., the authors correct for the number of extra fusion/fission operations required to make contigs comparable to full assemblies.