C
Catherine Reeves
Publications - 16
Citations - 871
Catherine Reeves is an academic researcher. The author has contributed to research in topics: Gene & Internal medicine. The author has an hindex of 5, co-authored 11 publications receiving 519 citations.
Papers
More filters
Journal ArticleDOI
Targeting renal cell carcinoma with a HIF-2 antagonist
Wenfang Chen,Haley Hill,Alana Christie,Min Kim,Eboni Holloman,Andrea Pavia-Jimenez,Farrah Homayoun,Yuanqing Ma,Nirav V. Patel,Paul Yell,Guiyang Hao,Qurratulain Yousuf,Allison Joyce,Ivan Pedrosa,Heather Geiger,He Zhang,Jenny Chang,Kevin H. Gardner,Richard K. Bruick,Catherine Reeves,Tae Hyun Hwang,Kevin D. Courtney,Eugene P. Frenkel,Xiankai Sun,Naseem J. Zojwalla,Tai Wong,James P. Rizzi,Wallace Eli M,John A. Josey,Yang Xie,Xian Jin Xie,Payal Kapur,Renée M. McKay,James Brugarolas +33 more
TL;DR: It is shown that some ccRCCs are HIF-2 independent, and set the stage for biomarker-driven clinical trials, using a tumourgraft/patient-derived xenograft platform to evaluate PT2399, a selective Hif-2 antagonist that was identified using a structure-based design approach.
Journal ArticleDOI
Mapping and Characterization of Structural Variation in 17,795 Human Genomes
Haley J. Abel,David E. Larson,Allison A. Regier,Colby Chiang,Indraniel Das,Krishna L. Kanchi,Ryan M. Layer,Benjamin M. Neale,Benjamin M. Neale,William J Salerno,Catherine Reeves,Steven Buyske,Nhgri Centers for Common Disease Genomics,Tara C. Matise,Donna M. Muzny,Michael C. Zody,Eric S. Lander,Eric S. Lander,Eric S. Lander,Susan K. Dutcher,Nathan O. Stitziel,Ira M. Hall +21 more
TL;DR: A scalable pipeline is used to map and characterize structural variants in 17,795 deeply sequenced human genomes to create the largest, to the authors' knowledge, whole-genome-sequencing-based structural variant resource so far and infer the dosage sensitivity of genes and noncoding elements.
Journal ArticleDOI
Assessing the contribution of rare variants to complex trait heritability from whole-genome sequence data
Pierrick Wainschtein,Deepti Jain,Zhili Zheng,Stella Aslibekyan,Diane M. Becker,Wenjian Bi,Jennifer A. Brody,Jenna C. Carlson,Adolfo Correa,Margaret Mengmeng Du,Lindsay Fernández-Rhodes,Kendra Ferrier,Misa Graff,Jiang He,Nancy L. Heard-Costa,Heather M. Highland,Joel N. Hirschhorn,Candace M Howard-Claudio,Carmen R. Isasi,Rebecca D. Jackson,Jicai Jiang,Roby Joehanes,Anne E. Justice,Rita R. Kalyani,Sharon L.R. Kardia,Ethan M. Lange,Meryl S. LeBoff,Seunggeun Lee,Xihao Li,Zilin Li,Elise Lim,Danyu Lin,Xihong Lin,Simin Liu,Ying Chang Lu,Joanna Manson,Lisa A. Martin,Caitlin P. McHugh,Julie L. Mikulla,Solomon K. Musani,Maggie C.Y. Ng,Deborah A. Nickerson,Nicholette D. Palmer,James C. Perry,Ulrike Peters,Michael Preuss,Qibin Qi,Laura M. Raffield,Laura J. Rasmussen-Torvik,Alexander P. Reiner,Emily M. Russell,Colleen M. Sitlani,Jennifer A. Smith,Cassandra N. Spracklen,Tao Wang,Zhe Wang,Jennifer Wessel,Hanfei Xu,Mohammadi Yaser,Sachiko Yoneyama,Kendra A. Young,Jingwen Zhang,Xinruo Zhang,Hufeng Zhou,Xiaofeng Zhu,Sebastian Zoellner,Namiko Abe,Gonçalo R. Abecasis,François Aguet,Laura Almasy,Álvaro Alonso,Seth A. Ament,Peter Anderson,Pramod Anugu,Deborah Applebaum-Bowden,Kristin G. Ardlie,Dan E. Arking,Allison E. Ashley-Koch,Tim Assimes,Paul L. Auer,Dimitrios Avramopoulos,Najib T. Ayas,Adithya Balasubramanian,John Barnard,Kathleen C. Barnes,Ronald G. Barr,Emily Barron-Casella,Lucas Barwick,Terri H. Beaty,Gerald Beck,Lewis C. Becker,Rebecca L. Beer,Amber L. Beitelshees,Emelia J. Benjamin,Takis Benos,Marcos Bezerra,Lawrence F. Bielak,Joshua A Bis,Thomas W. Blackwell,John Blangero,Donald W. Bowden,Russell P. Bowler,Ulrich Broeckel,Jai G. Broome,Deborah L. Brown,Karen L. Bunting,Esteban G. Burchard,Carlos Bustamante,Erin J Buth,Brian E. Cade,Jonathan Cardwell,Vincent J. Carey,Julie Carrier,April P Carson,Cara L. Carty,Richard Casaburi,Juan Pablo Casas Romero,James M. Casella,Peter J. Castaldi,Mark Chaffin,Christy Y. P. Chang,Yi-Cheng Chang,Sameer Chavan,Bo Chen,Wei-Min Chen,Mi Ae Cho,Seung Hoan Choi,Lee-Ming Chuang,Ren-Hua Chung,C. Clish,Suzy C. Comhair,Matthew P. Conomos,Elaine Cornell,Carolyn J. Crandall,J. A. Crapo,Joanne E. Curran,Jeffrey R. Curtis,Brian Custer,Coleen M. Damcott,Dawood Darbar,Sean David,Colleen P. Davis,Michelle Daya,L. de las Fuentes,Paul S. de Vries,Michael DeBaun,Ranjan Deka,Dawn L. DeMeo,Scott Devine,Huyen Dinh,Harshavardhan Doddapaneni,Qing Duan,Shannon Dugan-Perez,Ravindranath Duggirala,J. Peter Durda,Susan K. Dutcher,Charles B. Eaton,Lynette Ekunwe,A. El Boueiz,Leslie S. Emery,Serpil C. Erzurum,Charles D. Farber,Jesse Farek,Tasha E. Fingerlin,Matthew Flickinger,Nora Franceschini,Christian D. Frazar,Mao Fu,Stephanie M. Fullerton,Lucinda Fulton,Stacey Gabriel,Weiniu Gan,Shanshan Gao,Yan Gao,Margery Gass,Heather Geiger,Bruce Gelb,M. Geraci,Soren Germer,Robert E. Gerszten,Auyon J. Ghosh,Richard Gibbs,Christopher R. Gignoux,M. Ruban Gladwin,David E. Glahn,Stephanie M. Gogarten,Da-Wei Gong,Harald H.H. Gőring,Sharon L. Graw,Kathryn J. Gray,Daniel Grine,Colin Gross,C. Charles Gu,Yue Guan,Namrata Gupta,David M. Haas,Jeffrey Haessler,Michael N. Hall,Yi Han,Patrick J. Hanly,Daniel N. Harris,Nicola L. Hawley,Benjamin D. Heavner,David Herrington,Craig P. Hersh,Bertha Hidalgo,James E. Hixson,Brian D. Hobbs,John Hokanson,Elliot Hong,Karin F. Hoth,Chao A. Hsiung,Jianhong Hu,Yi Jen Hung,Haley Huston,Chii-Min Hwu,Marguerite R. Irvin,Cashell E. Jaquish,Jill M. Johnsen,Andrew Johnson,Craig Johnson,Richard Karl. Johnston,Kimberly Jones,Hyun Min Kang,Robert Kaplan,Shannon Jeanne Kelly,Eimear E. Kenny,Michael Kessler,Alyna T. Khan,Ziad Khan,Wonji Kim,John Kimoff,Greg Kinney,Barbara A. Konkle,Holly B. Kramer,Christoph Lange,Jiwon Lee,Sandra L. Lee,Wen-Jane Lee,Jonathon LeFaive,David K. Levine,Daniel Levy,Joshua P. Lewis,Xiaohui Li,Yun Li,Henry J. Lin,Honghuang Lin,Yongmei Liu,Yu Liu,Kathryn L. Lunetta,James Luo,Ulysses J. Magalang,Michael P. Mahaney,Barry J. Make,Ani Manichaikul,Alisa K. Manning,Melissa A. Marton,Susan Mathai,Susanne May,Patrick F. McArdle,Sean K. McFarland,Daniel J. McGoldrick,Becky McNeil,Hao Mei,J.R. Meigs,Vipin Menon,Luisa Mestroni,Ginger A. Metcalf,Deborah A. Meyers,Emmanuel Mignot,Nancy Min,Mollie A. Minear,Ryan L. Minster,Matthew Moll,Zeineen Momin,May E. Montasser,Courtney G. Montgomery,Donna M. Muzny,Josyf C. Mychaleckyj,Girish N. Nadkarni,Rakhi Naik,Take Naseri,Pradeep Natarajan,Sergei Nekhai,Sarah C. Nelson,Bonnie Neltner,Caitlin E. Nessner,Osuji Nkechinyere,T. O’Connor,Heather M. Ochs-Balcom,Geoffrey Okwuonu,Allan Pack,David T. Paik,James S. Pankow,George J. Papanicolaou,Cora Parker,Gina M. Peloso,Juan M. Peralta,Marco V Perez,Patricia A. Peyser,L. Phillips,Jacob Pleiness,Toni I. Pollin,Wendy S. Post,Julia Powers Becker,Meher Preethi Boorgula,Pankaj Qasba,Dandi Qiao,Zhaohui S. Qin,Nicholas Rafaels,Mahitha Rajendran,D. C. Rao,Aakrosh Ratan,Robert M. Reed,Catherine Reeves,Muagututi‘a Sefuiva Reupena,Kenneth Rice,Rébecca Robillard,Nicolas Robine,Carolina Roselli,Ingo Ruczinski,Alexi M Runnels,Pamela Russell,Sarah E. Ruuska,Kathleen A. Ryan,Ester Cerdeira Sabino,Danish Saleheen,Shabnam Salimi,Sejal Salvi,Steven L. Salzberg,Kevin Sandow,Vijay G. Sankaran,Jireh Santibanez,Karen Schwander,David A. Schwartz,Frank C. Sciurba,Christine E. Seidman,Jonathan Seidman,Vivien A. Sheehan,Stephanie Sherman,Amol C. Shetty,Aniket Shetty,Wayne H-H Sheu,Brian H. Silver,Edwin K. Silverman,Robert Skomro,Josh Smith,Tanja Smith,Sylvia Smoller,Beverly M. Snively,Michael Snyder,Tamar Sofer,Nona Sotoodehnia,Adrienne M. Stilp,Garrett R. Storm,Elizabeth A. Streeten,Jessica Lasky-Su,Yun Ju Sung,Jody S. Sylvia,Adam A. Szpiro,Daniel Taliun,Hua Tang,Margaret A. Taub,Kent D. Taylor,Matthew D. Taylor,Simeon I. Taylor,Marilyn I. Telen,Timothy A. Thornton,M. Threlkeld,Lesley F. Tinker,David L. Tirschwell,Sarah A. Tishkoff,Hemant K. Tiwari,Catherine Tong,Russell P. Tracy,Michael Y. Tsai,Dhananjay Vaidya,David Van Den Berg,Peter VandeHaar,Scott I. Vrieze,Tarik Walker,Robert B. Wallace,Avram D. Walts,Fei Fei Wang,Heming Wang,Jiongming Wang,Karol E. Watson,Jennifer Watt,Daniel E. Weeks,Joshua S. Weinstock,Scott T. Weiss,Lu-Chen Weng,Cristen J. Willer,Kayleen Williams,L. Keoki Williams,Carla F. Wilson,James F. Wilson,Lara Heermans Winterkorn,Quenna Wong,Joseph M. Wu,Huichun Xu,Ivana V. Yang,Ketian Yu,Seyedeh M. Zekavat,Yingze Zhang,Snow Xueyan Zhao,Wei Zhao,Michael C. Zody,L. Adrienne Cupples,Aladdin H. Shadyab,Barbara McKnight,Benjamin Shoemaker,Braxton D. Mitchell,Bruce M. Psaty,Charles Kooperberg,Ching-Ti Liu,Christine M. Albert,Dan M. Roden,Daniel I. Chasman,Donald M. Lloyd-Jones,Donna K. Arnett,Elizabeth A. Regan,Eric Boerwinkle,Jerome I. Rotter,Jeffrey R. O'Connell,Lisa R. Yanek,Mariza de Andrade,Matthew A. Allison,M. McDonald,Mina K. Chung,Myriam Fornage,Nathalie Chami,Nicholas L. Smith,Patrick T. Ellinor,Ramachandran S. Vasan,Rasika A. Mathias,Ruth J. F. Loos,Stephen S. Rich,Steven A. Lubitz,Susan R. Heckbert,Susan Redline,Xiuqing Guo,Y. D. Chen,Cecelia A. Laurie,Ryan D. Hernandez,Stephen T. McGarvey,Michael E. Goddard,Cathy C. Laurie,Kari E. North,Leslie A. Lange,Bruce S. Weir,Loic Yengo,Jian Yang,Peter M. Visscher +453 more
TL;DR: The results imply that rare variants, in particular those in regions of low linkage disequilibrium, are a major source of the still missing heritability of complex traits and disease.
Journal ArticleDOI
PGBD5 promotes site-specific oncogenic mutations in human tumors
Anton G. Henssen,Richard Koche,Jiali Zhuang,Eileen Jiang,Casie Reed,Amy Eisenberg,Eric Still,Ian C. MacArthur,Elias Rodriguez-Fos,Santiago Gonzalez,Montserrat Puiggròs,Andrew N. Blackford,Christopher E. Mason,Elisa de Stanchina,Mithat Gönen,Anne-Katrin Emde,Minita Shah,Kanika Arora,Catherine Reeves,Nicholas D. Socci,Elizabeth J. Perlman,Cristina R. Antonescu,Charles W. M. Roberts,Hanno Steen,Elizabeth Mullen,Stephen P. Jackson,Stephen P. Jackson,Stephen P. Jackson,David Torrents,David Torrents,Zhiping Weng,Scott A. Armstrong,Scott A. Armstrong,Alex Kentsis,Alex Kentsis +34 more
TL;DR: PGBD5 is defined as an oncogenic mutator and provide a plausible mechanism for site-specific DNA rearrangements in childhood and adult solid tumors.
Posted ContentDOI
Mapping and characterization of structural variation in 17,795 deeply sequenced human genomes
Haley J. Abel,Haley J. Abel,David E. Larson,David E. Larson,Colby Chiang,Indraniel Das,Krishna L. Kanchi,Ryan M. Layer,Benjamin M. Neale,Benjamin M. Neale,William J Salerno,Catherine Reeves,Steven Buyske,Nhgri Centers for Common Disease Genomics,Tara C. Matise,Donna M. Muzny,Michael C. Zody,Eric S. Lander,Eric S. Lander,Eric S. Lander,Susan K. Dutcher,Nathan O. Stitziel,Ira M. Hall +22 more
TL;DR: A cloud-based pipeline is used to map and characterize SV in 17,795 deeply sequenced human genomes from common disease trait mapping studies and exploit this resource to infer the dosage sensitivity of genes and non-coding elements, revealing strong trends related to regulatory element class, conservation and cell-type specificity.