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Benjamin A.C. Facer
Researcher at Allen Institute for Brain Science
Publications - 7
Citations - 6939
Benjamin A.C. Facer is an academic researcher from Allen Institute for Brain Science. The author has contributed to research in topics: Brain atlas & Connectome. The author has an hindex of 5, co-authored 7 publications receiving 5616 citations. Previous affiliations of Benjamin A.C. Facer include Allen Institute for Artificial Intelligence.
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Journal ArticleDOI
Genome-wide atlas of gene expression in the adult mouse brain
Ed S. Lein,Michael Hawrylycz,Nancy Ao,Mikael Ayres,Amy Bensinger,Amy Bernard,Andrew F. Boe,Mark S. Boguski,Mark S. Boguski,Kevin S. Brockway,Emi J. Byrnes,Lin Chen,Li Chen,Tsuey-Ming Chen,Mei Chi Chin,Jimmy Chong,Brian E. Crook,Aneta Czaplinska,Chinh Dang,Suvro Datta,Nick Dee,Aimee L. Desaki,Tsega Desta,Ellen Diep,Tim A. Dolbeare,Matthew J. Donelan,Hong-Wei Dong,Jennifer G. Dougherty,Ben J. Duncan,Amanda Ebbert,Gregor Eichele,Lili K. Estin,Casey Faber,Benjamin A.C. Facer,Rick Fields,Shanna R. Fischer,Tim P. Fliss,Cliff Frensley,Sabrina N. Gates,Katie J. Glattfelder,Kevin R. Halverson,Matthew R. Hart,John G. Hohmann,Maureen P. Howell,Darren P. Jeung,Rebecca A. Johnson,Patrick T. Karr,Reena Kawal,Jolene Kidney,Rachel H. Knapik,Chihchau L. Kuan,James H. Lake,Annabel R. Laramee,Kirk D. Larsen,Christopher Lau,Tracy Lemon,Agnes J. Liang,Ying Liu,Lon T. Luong,Jesse Michaels,Judith J. Morgan,Rebecca J. Morgan,Marty Mortrud,Nerick Mosqueda,Lydia Ng,Randy Ng,Geralyn J. Orta,Caroline C. Overly,Tu H. Pak,Sheana Parry,Sayan Dev Pathak,Owen C. Pearson,Ralph B. Puchalski,Zackery L. Riley,Hannah R. Rockett,Stephen A. Rowland,Joshua J. Royall,Marcos J. Ruiz,Nadia R. Sarno,Katherine Schaffnit,Nadiya V. Shapovalova,Taz Sivisay,Clifford R. Slaughterbeck,Simon Smith,Kimberly A. Smith,Bryan I. Smith,Andy J. Sodt,Nick N. Stewart,Kenda-Ruth Stumpf,Susan M. Sunkin,Madhavi Sutram,Angelene Tam,Carey D. Teemer,Christina Thaller,Carol L. Thompson,Lee R. Varnam,Axel Visel,Axel Visel,Ray M. Whitlock,Paul Wohnoutka,Crissa K. Wolkey,Victoria Y. Wong,Matthew J.A. Wood,Murat B. Yaylaoglu,Rob Young,Brian L. Youngstrom,Xu Feng Yuan,Bin Zhang,Theresa A. Zwingman,Allan R. Jones +109 more
TL;DR: An anatomically comprehensive digital atlas containing the expression patterns of ∼20,000 genes in the adult mouse brain is described, providing an open, primary data resource for a wide variety of further studies concerning brain organization and function.
Journal ArticleDOI
Transcriptional landscape of the prenatal human brain
Jeremy A. Miller,Songlin Ding,Susan M. Sunkin,Kimberly A. Smith,Lydia Ng,Aaron Szafer,Amanda Ebbert,Zackery L. Riley,Joshua J. Royall,Kaylynn Aiona,James M. Arnold,Crissa Bennet,Darren Bertagnolli,Krissy Brouner,Stephanie Butler,Shiella Caldejon,Anita Carey,Christine Cuhaciyan,Rachel A. Dalley,Nick Dee,Tim A. Dolbeare,Benjamin A.C. Facer,David Feng,Tim P. Fliss,Garrett Gee,Jeff Goldy,Lindsey Gourley,Benjamin W. Gregor,Guangyu Gu,Robert Howard,Jayson M. Jochim,Chihchau L. Kuan,Christopher Lau,Changkyu Lee,Felix Lee,Tracy Lemon,Phil Lesnar,Bergen McMurray,Naveed Mastan,Nerick Mosqueda,Theresa Naluai-Cecchini,Nhan Kiet Ngo,Julie Nyhus,Aaron Oldre,Eric Olson,Jody Parente,Patrick D. Parker,Sheana Parry,Allison Stevens,Mihovil Pletikos,Melissa Reding,Kate Roll,David Sandman,Melaine Sarreal,Sheila Shapouri,Nadiya V. Shapovalova,Elaine H. Shen,Nathan Sjoquist,Clifford R. Slaughterbeck,Michael W. Smith,Andy J. Sodt,Derric Williams,Lilla Zöllei,Bruce Fischl,Mark Gerstein,Daniel H. Geschwind,Ian A. Glass,Michael Hawrylycz,Robert F. Hevner,Hao Huang,Allan R. Jones,James A. Knowles,Pat Levitt,John W. Phillips,Nenad Sestan,Paul Wohnoutka,Chinh Dang,Amy Bernard,John G. Hohmann,Ed S. Lein +79 more
TL;DR: An anatomically comprehensive atlas of the mid-gestational human brain is described, including de novo reference atlases, in situ hybridization, ultra-high-resolution magnetic resonance imaging (MRI) and microarray analysis on highly discrete laser-microdissected brain regions.
Journal ArticleDOI
The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas.
Quanxin Wang,Songlin Ding,Yang Li,Josh Royall,David Feng,Phil Lesnar,Nile Graddis,Maitham Naeemi,Benjamin A.C. Facer,Anh Ho,Tim A. Dolbeare,Brandon Blanchard,Nick Dee,Wayne Wakeman,Karla E. Hirokawa,Aaron Szafer,Susan M. Sunkin,Seung Wook Oh,Amy Bernard,John W. Phillips,Michael Hawrylycz,Christof Koch,Hongkui Zeng,Julie A. Harris,Lydia Ng +24 more
TL;DR: This work constructed an average template brain at 10 μm voxel resolution by interpolating high resolution in-plane serial two-photon tomography images with 100 μm z-sampling from 1,675 young adult C57BL/6J mice and parcellated the entire brain directly in 3D.
Journal ArticleDOI
Comprehensive cellular‐resolution atlas of the adult human brain
Songlin Ding,Joshua J. Royall,Susan M. Sunkin,Lydia Ng,Benjamin A.C. Facer,Phil Lesnar,Angie Guillozet-Bongaarts,Bergen McMurray,Aaron Szafer,Tim A. Dolbeare,Allison Stevens,Lee S. Tirrell,Thomas Benner,Shiella Caldejon,Rachel A. Dalley,Nick Dee,Christopher Lau,Julie Nyhus,Melissa Reding,Zackery L. Riley,David Sandman,Elaine Shen,Andre van der Kouwe,Ani Varjabedian,Michelle Write,Lilla Zöllei,Chinh Dang,James A. Knowles,Christof Koch,John W. Phillips,Nenad Sestan,Paul Wohnoutka,H. Ronald Zielke,John G. Hohmann,Allan R. Jones,Amy Bernard,Michael Hawrylycz,Patrick R. Hof,Bruce Fischl,Ed S. Lein +39 more
TL;DR: This is the first digital human brain atlas to incorporate neuroimaging, high‐resolution histology, and chemoarchitecture across a complete adult female brain, consisting of magnetic resonance imaging (MRI), diffusion‐weighted imaging (DWI), and 1,356 large‐format cellular resolution (1 µm/pixel) Nissl and immunohistochemistry anatomical plates.
Journal ArticleDOI
Comprehensive cellular-resolution atlas of the adult human brain: Adult human brain atlas
Songlin Ding,Joshua J. Royall,Susan M. Sunkin,Lydia Ng,Benjamin A.C. Facer,Phil Lesnar,Angie Guillozet-Bongaarts,Bergen McMurray,Aaron Szafer,Tim A. Dolbeare,Allison Stevens,Lee S. Tirrell,Thomas Benner,Shiella Caldejon,Rachel A. Dalley,Nick Dee,Christopher Lau,Julie Nyhus,Melissa Reding,Zackery L. Riley,David Sandman,Elaine Shen,Andre van der Kouwe,Ani Varjabedian,Michelle Write,Lilla Zöllei,Chinh Dang,James A. Knowles,Christof Koch,John W. Phillips,Nenad Sestan,Paul Wohnoutka,H. Ronald Zielke,John G. Hohmann,Allan R. Jones,Amy Bernard,Michael Hawrylycz,Patrick R. Hof,Bruce Fischl,Ed S. Lein +39 more