J
Julie Nyhus
Researcher at Allen Institute for Brain Science
Publications - 25
Citations - 3175
Julie Nyhus is an academic researcher from Allen Institute for Brain Science. The author has contributed to research in topics: Biology & Neocortex. The author has an hindex of 10, co-authored 15 publications receiving 2169 citations. Previous affiliations of Julie Nyhus include Allen Institute for Artificial Intelligence.
Papers
More filters
Journal ArticleDOI
Transcriptional landscape of the prenatal human brain
Jeremy A. Miller,Songlin Ding,Susan M. Sunkin,Kimberly A. Smith,Lydia Ng,Aaron Szafer,Amanda Ebbert,Zackery L. Riley,Joshua J. Royall,Kaylynn Aiona,James M. Arnold,Crissa Bennet,Darren Bertagnolli,Krissy Brouner,Stephanie Butler,Shiella Caldejon,Anita Carey,Christine Cuhaciyan,Rachel A. Dalley,Nick Dee,Tim A. Dolbeare,Benjamin A.C. Facer,David Feng,Tim P. Fliss,Garrett Gee,Jeff Goldy,Lindsey Gourley,Benjamin W. Gregor,Guangyu Gu,Robert Howard,Jayson M. Jochim,Chihchau L. Kuan,Christopher Lau,Changkyu Lee,Felix Lee,Tracy Lemon,Phil Lesnar,Bergen McMurray,Naveed Mastan,Nerick Mosqueda,Theresa Naluai-Cecchini,Nhan Kiet Ngo,Julie Nyhus,Aaron Oldre,Eric Olson,Jody Parente,Patrick D. Parker,Sheana Parry,Allison Stevens,Mihovil Pletikos,Melissa Reding,Kate Roll,David Sandman,Melaine Sarreal,Sheila Shapouri,Nadiya V. Shapovalova,Elaine H. Shen,Nathan Sjoquist,Clifford R. Slaughterbeck,Michael W. Smith,Andy J. Sodt,Derric Williams,Lilla Zöllei,Bruce Fischl,Mark Gerstein,Daniel H. Geschwind,Ian A. Glass,Michael Hawrylycz,Robert F. Hevner,Hao Huang,Allan R. Jones,James A. Knowles,Pat Levitt,John W. Phillips,Nenad Sestan,Paul Wohnoutka,Chinh Dang,Amy Bernard,John G. Hohmann,Ed S. Lein +79 more
TL;DR: An anatomically comprehensive atlas of the mid-gestational human brain is described, including de novo reference atlases, in situ hybridization, ultra-high-resolution magnetic resonance imaging (MRI) and microarray analysis on highly discrete laser-microdissected brain regions.
Journal ArticleDOI
Conserved cell types with divergent features in human versus mouse cortex.
Rebecca D. Hodge,Trygve E. Bakken,Jeremy A. Miller,Kimberly A. Smith,Eliza Barkan,Lucas T. Graybuck,Jennie L. Close,Brian Long,Nelson Johansen,Osnat Penn,Zizhen Yao,Jeroen Eggermont,Thomas Höllt,Thomas Höllt,Boaz P. Levi,Soraya I. Shehata,Brian D. Aevermann,Allison Beller,Darren Bertagnolli,Krissy Brouner,Tamara Casper,Charles Cobbs,Rachel A. Dalley,Nick Dee,Songlin Ding,Richard G. Ellenbogen,Olivia Fong,Emma Garren,Jeff Goldy,Ryder P. Gwinn,Daniel Hirschstein,C. Dirk Keene,Mohamed Keshk,Andrew L. Ko,Andrew L. Ko,Kanan Lathia,Ahmed Mahfouz,Ahmed Mahfouz,Zoe Maltzer,Medea McGraw,Thuc Nghi Nguyen,Julie Nyhus,Jeffrey G. Ojemann,Jeffrey G. Ojemann,Aaron Oldre,Sheana Parry,Shannon Reynolds,Christine Rimorin,Nadiya V. Shapovalova,Saroja Somasundaram,Aaron Szafer,Elliot R. Thomsen,Michael Tieu,Gerald Quon,Richard H. Scheuermann,Richard H. Scheuermann,Rafael Yuste,Susan M. Sunkin,Boudewijn P. F. Lelieveldt,Boudewijn P. F. Lelieveldt,David Feng,Lydia Ng,Amy Bernard,Michael Hawrylycz,John W. Phillips,Bosiljka Tasic,Hongkui Zeng,Allan R. Jones,Christof Koch,Ed Lein +69 more
TL;DR: RNA-sequencing analysis of cells in the human cortex enabled identification of diverse cell types, revealing well-conserved architecture and homologous cell types as well as extensive differences when compared with datasets covering the analogous region of the mouse brain.
Journal ArticleDOI
A comprehensive transcriptional map of primate brain development
Trygve E. Bakken,Jeremy A. Miller,Songlin Ding,Susan M. Sunkin,Kimberly A. Smith,Lydia Ng,Aaron Szafer,Rachel A. Dalley,Joshua J. Royall,Tracy Lemon,Sheila Shapouri,Kaylynn Aiona,James M. Arnold,Jeffrey L. Bennett,Darren Bertagnolli,Kristopher Bickley,Andrew F. Boe,Krissy Brouner,Stephanie Butler,Emi J. Byrnes,Shiella Caldejon,Anita Carey,Shelby Cate,Mike Chapin,Jefferey Chen,Nick Dee,Tsega Desta,Tim A. Dolbeare,Nadia Dotson,Amanda Ebbert,Erich Fulfs,Garrett Gee,Terri L. Gilbert,Jeff Goldy,Lindsey Gourley,Ben W. Gregor,Guangyu Gu,Jon Hall,Zeb Haradon,David R. Haynor,Nika Hejazinia,Anna Hoerder-Suabedissen,Robert Howard,Jay Jochim,Marty Kinnunen,Ali Kriedberg,Chihchau L. Kuan,Christopher Lau,Changkyu Lee,Felix Lee,Lon T. Luong,Naveed Mastan,Ryan May,Jose Melchor,Nerick Mosqueda,Erika Mott,Kiet Ngo,Julie Nyhus,Aaron Oldre,Eric Olson,Jody Parente,Patrick D. Parker,Sheana Parry,Julie Pendergraft,Lydia Potekhina,Melissa Reding,Zackery L. Riley,Tyson Roberts,Brandon Rogers,Kate Roll,David Rosen,David Sandman,Melaine Sarreal,Nadiya V. Shapovalova,Shu Shi,Nathan Sjoquist,Andy J. Sodt,Robbie Townsend,Lissette Velasquez,Udi Wagley,Wayne Wakeman,Cassandra White,Crissa Bennett,Jennifer Wu,R.D. Young,Brian L. Youngstrom,Paul Wohnoutka,Richard A. Gibbs,Jeffrey Rogers,John G. Hohmann,Michael Hawrylycz,Robert F. Hevner,Zoltán Molnár,John W. Phillips,Chinh Dang,Allan R. Jones,David G. Amaral,Amy Bernard,Ed S. Lein +98 more
TL;DR: A high-resolution transcriptional atlas of rhesus monkey (Macaca mulatta) brain development is described that combines dense temporal sampling of prenatal and postnatal periods with fine anatomical division of cortical and subcortical regions associated with human neuropsychiatric disease.
Journal ArticleDOI
Comprehensive cellular‐resolution atlas of the adult human brain
Songlin Ding,Joshua J. Royall,Susan M. Sunkin,Lydia Ng,Benjamin A.C. Facer,Phil Lesnar,Angie Guillozet-Bongaarts,Bergen McMurray,Aaron Szafer,Tim A. Dolbeare,Allison Stevens,Lee S. Tirrell,Thomas Benner,Shiella Caldejon,Rachel A. Dalley,Nick Dee,Christopher Lau,Julie Nyhus,Melissa Reding,Zackery L. Riley,David Sandman,Elaine Shen,Andre van der Kouwe,Ani Varjabedian,Michelle Write,Lilla Zöllei,Chinh Dang,James A. Knowles,Christof Koch,John W. Phillips,Nenad Sestan,Paul Wohnoutka,H. Ronald Zielke,John G. Hohmann,Allan R. Jones,Amy Bernard,Michael Hawrylycz,Patrick R. Hof,Bruce Fischl,Ed S. Lein +39 more
TL;DR: This is the first digital human brain atlas to incorporate neuroimaging, high‐resolution histology, and chemoarchitecture across a complete adult female brain, consisting of magnetic resonance imaging (MRI), diffusion‐weighted imaging (DWI), and 1,356 large‐format cellular resolution (1 µm/pixel) Nissl and immunohistochemistry anatomical plates.
Journal ArticleDOI
Human neocortical expansion involves glutamatergic neuron diversification
Jim Berg,Staci A. Sorensen,Jonathan T. Ting,Jonathan T. Ting,Jeremy A. Miller,Thomas Chartrand,Anatoly Buchin,Trygve E. Bakken,Agata Budzillo,Nick Dee,Songlin Ding,Nathan W. Gouwens,Rebecca D. Hodge,Brian E. Kalmbach,Brian E. Kalmbach,Changkyu Lee,Brian Lee,Lauren Alfiler,Katherine Baker,Eliza Barkan,Allison Beller,Kyla Berry,Darren Bertagnolli,Kris Bickley,Jasmine Bomben,Thomas Braun,Krissy Brouner,Tamara Casper,Peter Chong,Kirsten Crichton,Rachel A. Dalley,Rebecca de Frates,Tsega Desta,Samuel Dingman Lee,Florence D’Orazi,Nadezhda Dotson,Tom Egdorf,Rachel Enstrom,Colin Farrell,David Feng,Olivia Fong,Szabina Furdan,Anna A. Galakhova,Clare Gamlin,Amanda Gary,Alexandra Glandon,Jeff Goldy,Melissa Gorham,Natalia A. Goriounova,Sergey L. Gratiy,Lucas T. Graybuck,Hong Gu,Kristen Hadley,Nathan Hansen,Tim S. Heistek,Alex M. Henry,Djai B. Heyer,Di Jon Hill,Chris Hill,Madie Hupp,Tim Jarsky,Sara Kebede,Lisa Keene,Lisa Kim,Mean Hwan Kim,Matthew Kroll,Caitlin S. Latimer,Boaz P. Levi,Katherine E. Link,Matthew Mallory,Rusty Mann,Desiree A. Marshall,Michelle Maxwell,Medea McGraw,Delissa McMillen,Erica J. Melief,Eline J. Mertens,Leona Mezei,Norbert Mihut,Stephanie Mok,Gábor Molnár,Alice Mukora,Lindsay Ng,Kiet Ngo,Philip R. Nicovich,Julie Nyhus,Gáspár Oláh,Aaron Oldre,Victoria Omstead,Attila Ozsvár,Daniel Park,Hanchuan Peng,Trangthanh Pham,Christina A. Pom,Lydia Potekhina,Ramkumar Rajanbabu,Shea Ransford,David Reid,Christine Rimorin,Augustin Ruiz,David Sandman,Josef Sulc,Susan M. Sunkin,Aaron Szafer,Viktor Szemenyei,Elliot R. Thomsen,Michael Tieu,Amy Torkelson,Jessica Trinh,Herman Tung,Wayne Wakeman,Femke Waleboer,Katelyn Ward,René Wilbers,Grace Williams,Zizhen Yao,Jae Geun Yoon,Costas A. Anastassiou,Anton Arkhipov,Pál Barzó,Amy Bernard,Charles Cobbs,Philip C. De Witt Hamer,Richard G. Ellenbogen,Luke Esposito,Manuel Ferreira,Ryder P. Gwinn,Michael Hawrylycz,Patrick R. Hof,Sander Idema,Allan R. Jones,C. Dirk Keene,Andrew L. Ko,Gabe J. Murphy,Gabe J. Murphy,Lydia Ng,Jeffrey G. Ojemann,Anoop P. Patel,John W. Phillips,Daniel L. Silbergeld,Kimberly A. Smith,Bosiljka Tasic,Rafael Yuste,Idan Segev,Christiaan P. J. de Kock,Huibert D. Mansvelder,Gábor Tamás,Hongkui Zeng,Christof Koch,Ed S. Lein,Ed S. Lein +150 more
TL;DR: In this article, a robust platform combining patch clamp recording, biocytin staining and single-cell RNA-sequencing (Patch-seq) was developed to examine neurosurgically resected human tissues.