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Shiella Caldejon
Researcher at Allen Institute for Brain Science
Publications - 33
Citations - 3528
Shiella Caldejon is an academic researcher from Allen Institute for Brain Science. The author has contributed to research in topics: Visual cortex & Biology. The author has an hindex of 14, co-authored 29 publications receiving 2366 citations. Previous affiliations of Shiella Caldejon include Allen Institute for Artificial Intelligence.
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Journal ArticleDOI
Transcriptional landscape of the prenatal human brain
Jeremy A. Miller,Songlin Ding,Susan M. Sunkin,Kimberly A. Smith,Lydia Ng,Aaron Szafer,Amanda Ebbert,Zackery L. Riley,Joshua J. Royall,Kaylynn Aiona,James M. Arnold,Crissa Bennet,Darren Bertagnolli,Krissy Brouner,Stephanie Butler,Shiella Caldejon,Anita Carey,Christine Cuhaciyan,Rachel A. Dalley,Nick Dee,Tim A. Dolbeare,Benjamin A.C. Facer,David Feng,Tim P. Fliss,Garrett Gee,Jeff Goldy,Lindsey Gourley,Benjamin W. Gregor,Guangyu Gu,Robert Howard,Jayson M. Jochim,Chihchau L. Kuan,Christopher Lau,Changkyu Lee,Felix Lee,Tracy Lemon,Phil Lesnar,Bergen McMurray,Naveed Mastan,Nerick Mosqueda,Theresa Naluai-Cecchini,Nhan Kiet Ngo,Julie Nyhus,Aaron Oldre,Eric Olson,Jody Parente,Patrick D. Parker,Sheana Parry,Allison Stevens,Mihovil Pletikos,Melissa Reding,Kate Roll,David Sandman,Melaine Sarreal,Sheila Shapouri,Nadiya V. Shapovalova,Elaine H. Shen,Nathan Sjoquist,Clifford R. Slaughterbeck,Michael W. Smith,Andy J. Sodt,Derric Williams,Lilla Zöllei,Bruce Fischl,Mark Gerstein,Daniel H. Geschwind,Ian A. Glass,Michael Hawrylycz,Robert F. Hevner,Hao Huang,Allan R. Jones,James A. Knowles,Pat Levitt,John W. Phillips,Nenad Sestan,Paul Wohnoutka,Chinh Dang,Amy Bernard,John G. Hohmann,Ed S. Lein +79 more
TL;DR: An anatomically comprehensive atlas of the mid-gestational human brain is described, including de novo reference atlases, in situ hybridization, ultra-high-resolution magnetic resonance imaging (MRI) and microarray analysis on highly discrete laser-microdissected brain regions.
Journal ArticleDOI
Hierarchical organization of cortical and thalamic connectivity
Julie A. Harris,Stefan Mihalas,Karla E. Hirokawa,Jennifer D. Whitesell,Hannah Choi,Hannah Choi,Amy Bernard,Phillip Bohn,Shiella Caldejon,Linzy Casal,Andrew Cho,Aaron Feiner,David Feng,Nathalie Gaudreault,Charles R. Gerfen,Nile Graddis,Peter A. Groblewski,Alex M. Henry,Anh Ho,Robert Howard,Joseph E. Knox,Leonard Kuan,Xiuli Kuang,Jérôme Lecoq,Phil Lesnar,Yaoyao Li,Jennifer Luviano,Stephen McConoughey,Marty Mortrud,Maitham Naeemi,Lydia Ng,Seung Wook Oh,Benjamin Ouellette,Elise Shen,Staci A. Sorensen,Wayne Wakeman,Quanxin Wang,Yun Wang,Ali Williford,John W. Phillips,Allan R. Jones,Christof Koch,Hongkui Zeng +42 more
TL;DR: Using mouse lines in which subsets of neurons are genetically labelled, the authors provide generalized anatomical rules for connections within and between the cortex and thalamus, showing that cell-class-specific connections are organized in a shallow hierarchy within the mouse corticothalamic network.
Journal ArticleDOI
An anatomic transcriptional atlas of human glioblastoma
Ralph B. Puchalski,Nameeta Shah,Jeremy A. Miller,Rachel A. Dalley,Steve R. Nomura,Jae Guen Yoon,Kimberly A. Smith,Michael Lankerovich,Darren Bertagnolli,Kris Bickley,Andrew F. Boe,Krissy Brouner,Stephanie Butler,Shiella Caldejon,Mike Chapin,Suvro Datta,Nick Dee,Tsega Desta,Tim A. Dolbeare,Nadezhda Dotson,Amanda Ebbert,David Feng,Xu Feng,Michael S. Fisher,Garrett Gee,Jeff Goldy,Lindsey Gourley,Benjamin W. Gregor,Guangyu Gu,Nika Hejazinia,John G. Hohmann,Parvinder Hothi,Robert Howard,Kevin M. Joines,Ali Kriedberg,Leonard Kuan,Chris Lau,Felix Lee,Hwahyung Lee,Tracy Lemon,Fuhui Long,Naveed Mastan,Erika Mott,Chantal Murthy,Kiet Ngo,Eric Olson,Melissa Reding,Zack Riley,David Rosen,David Sandman,Nadiya V. Shapovalova,Clifford R. Slaughterbeck,Andrew Sodt,Graham Stockdale,Aaron Szafer,Wayne Wakeman,Paul Wohnoutka,Steven J. White,Don Marsh,Robert C. Rostomily,Robert C. Rostomily,Lydia Ng,Chinh Dang,Allan R. Jones,Bart Keogh,Haley Gittleman,Jill S. Barnholtz-Sloan,Patrick J. Cimino,Megha S Uppin,C. Dirk Keene,Farrokh Farrokhi,Justin D. Lathia,Michael E. Berens,Antonio Iavarone,Amy Bernard,Ed S. Lein,John W. Phillips,Steven Rostad,Charles Cobbs,Michael Hawrylycz,Greg Foltz +80 more
TL;DR: The Ivy Glioblastoma Atlas is presented, an anatomically based transcriptional atlas of human gliOBlastoma that aligns individual histologic features with genomic alterations and gene expression patterns, thus assigning molecular information to the most important morphologic hallmarks of the tumor.
Journal ArticleDOI
Classification of electrophysiological and morphological neuron types in the mouse visual cortex.
Nathan W. Gouwens,Staci A. Sorensen,Jim Berg,Changkyu Lee,Tim Jarsky,Jonathan T. Ting,Susan M. Sunkin,David Feng,Costas A. Anastassiou,Eliza Barkan,Kris Bickley,Nicole Blesie,Thomas Braun,Krissy Brouner,Agata Budzillo,Shiella Caldejon,Tamara Casper,Dan Castelli,Peter Chong,Kirsten Crichton,Christine Cuhaciyan,Tanya L. Daigle,Rachel A. Dalley,Nick Dee,Tsega Desta,Songlin Ding,Samuel Dingman,Alyse Doperalski,Nadezhda Dotson,Tom Egdorf,Michael S. Fisher,Rebecca de Frates,Emma Garren,Marissa Garwood,Amanda Gary,Nathalie Gaudreault,Keith B. Godfrey,Melissa Gorham,Hong Gu,Caroline Habel,Kristen Hadley,James Harrington,Julie A. Harris,Alex M. Henry,DiJon Hill,Samuel R Josephsen,Sara Kebede,Lisa Kim,Matthew Kroll,Brian Lee,Tracy Lemon,Katherine E. Link,Xiaoxiao Liu,Brian Long,Rusty Mann,Medea McGraw,Stefan Mihalas,Alice Mukora,Gabe J. Murphy,Lindsay Ng,Kiet Ngo,Thuc Nghi Nguyen,Philip R. Nicovich,Aaron Oldre,Daniel Park,Sheana Parry,Jed Perkins,Lydia Potekhina,David Reid,Miranda Robertson,David Sandman,Martin Schroedter,Cliff Slaughterbeck,Gilberto J. Soler-Llavina,Josef Sulc,Aaron Szafer,Bosiljka Tasic,Naz Taskin,Corinne Teeter,Nivretta Thatra,Herman Tung,Wayne Wakeman,Grace Williams,Rob Young,Zhi Zhou,Colin Farrell,Hanchuan Peng,Michael Hawrylycz,Ed Lein,Lydia Ng,Anton Arkhipov,Amy Bernard,John W. Phillips,Hongkui Zeng,Christof Koch +94 more
TL;DR: A single-cell characterization pipeline is established using standardized patch-clamp recordings in brain slices and biocytin-based neuronal reconstructions to establish a morpho-electrical taxonomy of cell types for the mouse visual cortex via unsupervised clustering analysis of multiple quantitative features.
Journal ArticleDOI
A comprehensive transcriptional map of primate brain development
Trygve E. Bakken,Jeremy A. Miller,Songlin Ding,Susan M. Sunkin,Kimberly A. Smith,Lydia Ng,Aaron Szafer,Rachel A. Dalley,Joshua J. Royall,Tracy Lemon,Sheila Shapouri,Kaylynn Aiona,James M. Arnold,Jeffrey L. Bennett,Darren Bertagnolli,Kristopher Bickley,Andrew F. Boe,Krissy Brouner,Stephanie Butler,Emi J. Byrnes,Shiella Caldejon,Anita Carey,Shelby Cate,Mike Chapin,Jefferey Chen,Nick Dee,Tsega Desta,Tim A. Dolbeare,Nadia Dotson,Amanda Ebbert,Erich Fulfs,Garrett Gee,Terri L. Gilbert,Jeff Goldy,Lindsey Gourley,Ben W. Gregor,Guangyu Gu,Jon Hall,Zeb Haradon,David R. Haynor,Nika Hejazinia,Anna Hoerder-Suabedissen,Robert Howard,Jay Jochim,Marty Kinnunen,Ali Kriedberg,Chihchau L. Kuan,Christopher Lau,Changkyu Lee,Felix Lee,Lon T. Luong,Naveed Mastan,Ryan May,Jose Melchor,Nerick Mosqueda,Erika Mott,Kiet Ngo,Julie Nyhus,Aaron Oldre,Eric Olson,Jody Parente,Patrick D. Parker,Sheana Parry,Julie Pendergraft,Lydia Potekhina,Melissa Reding,Zackery L. Riley,Tyson Roberts,Brandon Rogers,Kate Roll,David Rosen,David Sandman,Melaine Sarreal,Nadiya V. Shapovalova,Shu Shi,Nathan Sjoquist,Andy J. Sodt,Robbie Townsend,Lissette Velasquez,Udi Wagley,Wayne Wakeman,Cassandra White,Crissa Bennett,Jennifer Wu,R.D. Young,Brian L. Youngstrom,Paul Wohnoutka,Richard A. Gibbs,Jeffrey Rogers,John G. Hohmann,Michael Hawrylycz,Robert F. Hevner,Zoltán Molnár,John W. Phillips,Chinh Dang,Allan R. Jones,David G. Amaral,Amy Bernard,Ed S. Lein +98 more
TL;DR: A high-resolution transcriptional atlas of rhesus monkey (Macaca mulatta) brain development is described that combines dense temporal sampling of prenatal and postnatal periods with fine anatomical division of cortical and subcortical regions associated with human neuropsychiatric disease.