C
Csilla Várnai
Researcher at University of Birmingham
Publications - 46
Citations - 4997
Csilla Várnai is an academic researcher from University of Birmingham. The author has contributed to research in topics: Gene & Chromatin. The author has an hindex of 19, co-authored 40 publications receiving 3350 citations. Previous affiliations of Csilla Várnai include University of Cambridge & Babraham Institute.
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Journal ArticleDOI
COVID-19 mortality in patients with cancer on chemotherapy or other anticancer treatments: a prospective cohort study.
Lennard Y W Lee,Jean-Baptiste Cazier,Vasileios Angelis,Roland Arnold,Vartika Bisht,Naomi A. Campton,Julia Chackathayil,Vinton Cheng,Helen Curley,Matthew W. Fittall,Luke Freeman-Mills,Spyridon Gennatas,Anshita Goel,Simon Hartley,D.J. Hughes,David J. Kerr,Alvin J.X. Lee,Rebecca Lee,Sophie McGrath,Christopher P. Middleton,N. Murugaesu,Thomas Newsom-Davis,Alicia Okines,Anna Olsson-Brown,Claire Palles,Yi Pan,Ruth Pettengell,Thomas Powles,Emily A. Protheroe,Karin Purshouse,Archana Sharma-Oates,Shivan Sivakumar,Ashley J. Smith,Thomas Starkey,Chris D. Turnbull,Csilla Várnai,Nadia Yousaf,Rachel Kerr,Gary Middleton +38 more
TL;DR: The clinical and demographic characteristics and COVID-19 outcomes in patients with cancer appear to be principally driven by age, gender, and comorbidities.
Journal ArticleDOI
Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
Biola M. Javierre,Oliver S. Burren,Steven P. Wilder,Roman Kreuzhuber,Steven M. Hill,Sven Sewitz,Jonathan Cairns,Steven W. Wingett,Csilla Várnai,Michiel J. Thiecke,Frances Burden,Samantha Farrow,Antony J. Cutler,Karola Rehnström,Kate Downes,Luigi Grassi,Myrto Kostadima,Paula Freire-Pritchett,Fan Wang,Hendrik G. Stunnenberg,John A. Todd,Daniel R. Zerbino,Oliver Stegle,Willem H. Ouwehand,Mattia Frontini,Chris Wallace,Mikhail Spivakov,Peter Fraser +27 more
TL;DR: This work uses promoter capture Hi-C to identify interacting regions of 31,253 promoters in 17 human primary hematopoietic cell types and shows that promoter interactions are highly cell type specific and enriched for links between active promoters and epigenetically marked enhancers.
Journal ArticleDOI
Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins
Gordana Wutz,Csilla Várnai,Kota Nagasaka,David A. Cisneros,Roman R. Stocsits,Wen Tang,Stefan Schoenfelder,Gregor Jessberger,Matthias Muhar,M. Julius Hossain,Nike Walther,Birgit Koch,Moritz Kueblbeck,Jan Ellenberg,Johannes Zuber,Peter Fraser,Peter Fraser,Jan-Michael Peters +17 more
TL;DR: It is shown that cohesin suppresses compartments but is required for TADs and loops, that CTCF defines their boundaries, and that the cohes in unloading factor WAPL and its PDS5 binding partners control the length of loops.
Journal ArticleDOI
Cell-cycle dynamics of chromosomal organization at single-cell resolution
Takashi Nagano,Yaniv Lubling,Csilla Várnai,Carmel Dudley,Wing Leung,Yael Baran,Netta Mendelson Cohen,Steven W. Wingett,Peter Fraser,Peter Fraser,Amos Tanay +10 more
TL;DR: It is shown that chromosomal compartments, topological-associated domains (TADs), contact insulation and long-range loops, all defined by bulk Hi-C maps, are governed by distinct cell-cycle dynamics, while loops are generally stable from G1 to S and G2 phase.
Journal ArticleDOI
COVID-19 prevalence and mortality in patients with cancer and the effect of primary tumour subtype and patient demographics: a prospective cohort study.
Lee Lyw.,Cazier J-B.,Thomas Starkey,Briggs Sew.,Roland Arnold,Vartika Bisht,Stephen Booth,Naomi A. Campton,Cheng Vwt.,Gary S. Collins,Helen Curley,P Earwaker,Matthew W. Fittall,Spyridon Gennatas,Anshita Goel,Simon Hartley,D.J. Hughes,David J. Kerr,Lee Ajx.,Rebecca Lee,Siow Ming Lee,H Mckenzie,Christopher P. Middleton,N. Murugaesu,Thomas Newsom-Davis,Anna Olsson-Brown,Claire Palles,Thomas Powles,Emily A. Protheroe,Karin Purshouse,Archana Sharma-Oates,Shivan Sivakumar,A J Smith,O Topping,Chris D. Turnbull,Csilla Várnai,Briggs Adm.,Gary Middleton,Rachel Kerr +38 more
TL;DR: This study compared adult patients with cancer enrolled in the UK Coronavirus Cancer Monitoring Project between March 18 and May 8, 2020 with a parallel non-COVID-19 UK cancer control population, and analyzed the effect of primary tumour subtype, age, and sex and on severe acute respiratory syndrome coronavirus 2 prevalence and the case–fatality rate during hospital admission.