D
Daniel Farid
Researcher at Yale University
Publications - 2
Citations - 10
Daniel Farid is an academic researcher from Yale University. The author has contributed to research in topics: Genome & Personal genomics. The author has an hindex of 1, co-authored 1 publications receiving 2 citations.
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Posted ContentDOI
Multi-tissue integrative analysis of personal epigenomes
Joel Rozowsky,Jorg Drenkow,Yucheng T. Yang,Gamze Gürsoy,Timur R. Galeev,Beatrice Borsari,Charles B. Epstein,Kun Xiong,Jinrui Xu,Jiahao Gao,Keyang Yu,Ana Berthel,Zhanlin Chen,Fabio C. P. Navarro,Jason Liu,Maxwell Sun,James C. Wright,Justin Chang,Christopher J. F. Cameron,Noam Shoresh,Elizabeth Gaskell,Jessika Adrian,Sergey Aganezov,Gabriela Balderrama-Gutierrez,Samridhi Banskota,Guillermo Corona,Sora Chee,Surya B. Chhetri,Gabriel Martins,Cassidy Danyko,Carrie A. Davis,Daniel Farid,Nina Farrell,Idan Gabdank,Yoel Gofin,David U. Gorkin,Mengting Gu,Vivian Hecht,Benjamin C. Hitz,Robbyn Issner,Melanie Kirsche,Xiangmeng Kong,Bonita R. Lam,Shantao Li,Bian Li,Tianxiao Li,Xiqi Li,Khine Lin,Ruibang Luo,Mark Mackiewicz,Jill Moore,Jonathan M. Mudge,Nicholas Nelson,Chad Nusbaum,Ioann Popov,Henry Pratt,Yunjiang Qiu,Srividya Ramakrishnan,Joe Raymond,Leonidas Salichos,Leonidas Salichos,Alexandra Scavelli,Jacob Schreiber,Fritz J. Sedlazeck,Fritz J. Sedlazeck,Fritz J. Sedlazeck,Lei See,Rachel M. Sherman,Xu Shi,Minyi Shi,Cricket A. Sloan,Seth Strattan,Zhen Tan,Forrest Y. Tanaka,Anna Vlasova,Jun Wang,Jonathan Werner,Brian Williams,Min Xu,Chengfei Yan,Lu Yu,Chris Zaleski,Jing Zhang,Jing Zhang,Michael Cherry,Eric M. Mendenhall,William Stafford Noble,Zhiping Weng,Morgan E. Levine,Alexander Dobin,Barbara J. Wold,Ali Mortazavi,Bing Ren,Jesse Gillis,Richard M. Myers,Michael Snyder,Jyoti S. Choudhary,Aleksandar Milosavljevic,Michael C. Schatz,Michael C. Schatz,Roderic Guigó,Bradley E. Bernstein,Bradley E. Bernstein,Thomas R. Gingeras,Mark Gerstein +104 more
TL;DR: In this paper, the authors constructed phased, diploid genomes for four cadaveric donors (using long-read sequencing) and systematically charted noncoding regulatory elements and transcriptional activity across more than 25 tissues from these donors.
Journal ArticleDOI
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
Joel Rozowsky,Jorg Drenkow,Yucheng T. Yang,Gamze Gursoy,Timur R. Galeev,Beatrice Borsari,Charles B. Epstein,Kun Xiong,Jinrui Xu,Jiahao Gao,Kai Yu,Ana Berthel,Zhanlin Chen,Fabio C. P. Navarro,Jason Liu,Maxwell S Sun,James C. Wright,Justin Chang,Christopher J. F. Cameron,Noam Shoresh,Elizabeth Gaskell,Jessika Adrian,Sergey Aganezov,François Aguet,Gabriela Balderrama-Gutierrez,Samridhi Banskota,G. Corona,Sora Chee,Surya B. Chhetri,Gabriel Conte Cortez Martins,Cassidy Danyko,Carrie A. Davis,Daniel Farid,Nina Farrell,Idan Gabdank,Yoel Gofin,David U. Gorkin,Mengting Gu,Vivian C. Hecht,Benjamin C. Hitz,Robbyn Issner,Melanie Kirsche,Xiangmeng Kong,Bonita R Lam,Shantao Li,Bian Li,Tianxiao Li,Xiqi Li,Khine Lin,Ruibang Luo,Mark Mackiewicz,Jill Moore,Jonathan M. Mudge,Nicholas C Nelson,Chad Nusbaum,Ioann O. Popov,Henry Pratt,Yunjiang Qiu,Srividya Ramakrishnan,Joe Raymond,Leonidas Salichos,Alexandra Scavelli,Jacob Schreiber,Fritz J. Sedlazeck,Lei-Hoon See,Rachel M. Sherman,Xu Shi,Minyi Shi,Cricket A. Sloan,J. Seth Strattan,Zhen Tan,Forrest Y. Tanaka,Anna Vlasova,Jun Wang,Jonathan D. Werner,Brian A. Williams,Min Xu,Chengfei Yan,Lu Yu,Chris Zaleski,Jing Zhang,Kristin G. Ardlie,J. M. Cherry,Eric M. Mendenhall,William Noble,Zhiping Weng,Morgan E. Levine,Alexander Dobin,Barbara J. Wold,Ali Mortazavi,Bing Ren,Jesse Gillis,Richard M. Myers,Michael Snyder,Jyoti S. Choudhary,Aleksandar Milosavljević,Michael C. Schatz,Roderic Guigó,Bradley E. Bernstein,Thomas R. Gingeras,Mark Gerstein +100 more
TL;DR: The EN-TEx dataset as mentioned in this paper contains 1,635 open-access datasets from four donors (∼30 tissues × ∼15 assays) mapped to matched, diploid genomes with long read phasing and structural variants, instantiating a catalog of >1 million allele-specific loci.