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Darwin Y. Fu
Researcher at Vanderbilt University Medical Center
Publications - 15
Citations - 846
Darwin Y. Fu is an academic researcher from Vanderbilt University Medical Center. The author has contributed to research in topics: Docking (molecular) & Logistic regression. The author has an hindex of 8, co-authored 15 publications receiving 439 citations. Previous affiliations of Darwin Y. Fu include Vanderbilt University.
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Journal ArticleDOI
Macromolecular modeling and design in Rosetta: recent methods and frameworks
Julia Koehler Leman,Brian D. Weitzner,Brian D. Weitzner,Steven M. Lewis,Steven M. Lewis,Jared Adolf-Bryfogle,Nawsad Alam,Rebecca F. Alford,Melanie L. Aprahamian,David Baker,Kyle A. Barlow,Patrick Barth,Patrick Barth,Benjamin Basanta,Brian J. Bender,Kristin Blacklock,Jaume Bonet,Jaume Bonet,Scott E. Boyken,Phil Bradley,Christopher Bystroff,Patrick Conway,Seth Cooper,Bruno E. Correia,Bruno E. Correia,Brian Coventry,Rhiju Das,René M. de Jong,Frank DiMaio,Lorna Dsilva,Roland L. Dunbrack,Alex Ford,Brandon Frenz,Darwin Y. Fu,Caleb Geniesse,Lukasz Goldschmidt,Ragul Gowthaman,Jeffrey J. Gray,Dominik Gront,Sharon L. Guffy,Scott Horowitz,Po-Ssu Huang,Thomas Huber,Timothy M. Jacobs,Jeliazko R. Jeliazkov,David K. Johnson,Kalli Kappel,John Karanicolas,Hamed Khakzad,Hamed Khakzad,Karen R. Khar,Sagar D. Khare,Firas Khatib,Alisa Khramushin,Indigo Chris King,Robert Kleffner,Brian Koepnick,Tanja Kortemme,Georg Kuenze,Brian Kuhlman,Daisuke Kuroda,Jason W. Labonte,Jason W. Labonte,Jason K. Lai,Gideon Lapidoth,Andrew Leaver-Fay,Steffen Lindert,Thomas W. Linsky,Nir London,Joseph H. Lubin,Sergey Lyskov,Jack Maguire,Lars Malmström,Lars Malmström,Lars Malmström,Enrique Marcos,Orly Marcu,Nicholas A. Marze,Jens Meiler,Rocco Moretti,Vikram Khipple Mulligan,Santrupti Nerli,Christoffer Norn,Shane O’Conchúir,Noah Ollikainen,Sergey Ovchinnikov,Michael S. Pacella,Xingjie Pan,Hahnbeom Park,Ryan E. Pavlovicz,Manasi A. Pethe,Brian G. Pierce,Kala Bharath Pilla,Barak Raveh,P. Douglas Renfrew,Shourya S. Roy Burman,Aliza B. Rubenstein,Marion F. Sauer,Andreas Scheck,Andreas Scheck,William R. Schief,Ora Schueler-Furman,Yuval Sedan,Alexander M. Sevy,Nikolaos G. Sgourakis,Lei Shi,Justin B. Siegel,Daniel-Adriano Silva,Shannon Smith,Yifan Song,Amelie Stein,Maria Szegedy,Frank D. Teets,Summer B. Thyme,Ray Yu-Ruei Wang,Andrew M. Watkins,Lior Zimmerman,Richard Bonneau +117 more
TL;DR: This Perspective reviews tools developed over the past five years in the Rosetta software, including over 80 methods, and discusses improvements to the score function, user interfaces and usability.
Journal ArticleDOI
Protocols for Molecular Modeling with Rosetta3 and RosettaScripts
Brian J. Bender,Alberto Cisneros,Amanda M. Duran,Jessica A. Finn,Darwin Y. Fu,Alyssa D. Lokits,Benjamin K. Mueller,Amandeep K. Sangha,Marion F. Sauer,Alexander M. Sevy,Gregory Sliwoski,Jonathan H. Sheehan,Frank DiMaio,Jens Meiler,Rocco Moretti +14 more
TL;DR: An overview of the Rosetta suite of biomacromolecular modeling software and a series of step-by-step tutorials that feature de novo folding, comparative modeling, loop construction, protein docking, small molecule docking, and protein design are shared.
Journal ArticleDOI
Meta-Research: Releasing a preprint is associated with more attention and citations for the peer-reviewed article
Darwin Y. Fu,Jacob J. Hughey +1 more
TL;DR: It is found that articles with a preprints had, on average, a 49% higher Altmetric Attention Score and 36% more citations than articles without a preprint.
Posted ContentDOI
Releasing a preprint is associated with more attention and citations for the peer-reviewed article
TL;DR: In this paper, the authors examined whether having a preprint on bioRxiv was associated with metrics of the corresponding peer-reviewed article and found that articles with preprint had a 51% higher Altmetric Attention Score and 37% more citations compared to articles without one.
Posted ContentDOI
Releasing a preprint is associated with more attention and citations
Darwin Y. Fu,Jacob J. Hughey +1 more
TL;DR: It is found that articles with a preprint had a 51% higher Altmetric Attention Score and 37% more citations compared to articles without one and this observational study can help researchers and publishers make informed decisions about how to incorporate preprints into their work.