G
Giulia C. Kennedy
Researcher at Affymetrix
Publications - 73
Citations - 5410
Giulia C. Kennedy is an academic researcher from Affymetrix. The author has contributed to research in topics: Genotyping & Medicine. The author has an hindex of 26, co-authored 61 publications receiving 5240 citations. Previous affiliations of Giulia C. Kennedy include Solazyme & Thermo Fisher Scientific.
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Journal ArticleDOI
A Robust Algorithm for Copy Number Detection Using High-Density Oligonucleotide Single Nucleotide Polymorphism Genotyping Arrays
Yasuhito Nannya,Masashi Sanada,Kumi Nakazaki,Noriko Hosoya,Lili Wang,Akira Hangaishi,Mineo Kurokawa,Shigeru Chiba,Dione K. Bailey,Giulia C. Kennedy,Seishi Ogawa +10 more
TL;DR: Improvements in signal-to-noise ratios and the use of an optimized reference make CNAG a useful tool for high-resolution detection of copy number alterations which can help in the understanding of the pathogenesis of cancers and other diseases as well as in exploring the complexities of the human genome.
Journal ArticleDOI
Large-scale genotyping of complex DNA
Giulia C. Kennedy,Hajime Matsuzaki,Shoulian Dong,Wei-Min Liu,Jing Huang,Guoying Liu,Xing Su,Xing Su,Manqiu Cao,Wenwei Chen,Jane Zhang,Weiwei Liu,Geoffrey Yang,Xiaojun Di,Thomas B. Ryder,Zhijun He,Urvashi Surti,Michael S. Phillips,Michael T Boyce-Jacino,Stephen P. A. Fodor,Keith W. Jones +20 more
TL;DR: This work rapidly genotyped 14,548 SNPs in three different human populations and identified a subset of them with significant allele frequency differences between groups and determined the ancestral allele for 8,386 SNPs by genotyping chimpanzees and gorilla DNA.
Journal ArticleDOI
Mapping human genetic diversity in Asia
Mahmood Ameen Abdulla,Ikhlak Ahmed,Anunchai Assawamakin,Anunchai Assawamakin,Jong Bhak,Samir K. Brahmachari,Gayvelline C. Calacal,Amit Kumar Chaurasia,Chien-Hsiun Chen,Jieming Chen,Yuan-Tsong Chen,Jiayou Chu,Eva Maria Cutiongco-de la Paz,Maria Corazon A. De Ungria,Frederick C. Delfin,Juli Edo,Suthat Fuchareon,Ho Ghang,Takashi Gojobori,Junsong Han,Sheng Feng Ho,Boon Peng Hoh,Wei Huang,Hidetoshi Inoko,Pankaj Jha,Timothy A. Jinam,Li Jin,Jongsun Jung,Daoroong Kangwanpong,Jatupol Kampuansai,Giulia C. Kennedy,Preeti Khurana,Hyung Lae Kim,Kwangjoong Kim,Sangsoo Kim,Woo Yeon Kim,Kuchan Kimm,Ryosuke Kimura,Tomohiro Koike,Supasak Kulawonganunchai,Vikrant Kumar,Poh San Lai,Jong-Young Lee,Sunghoon Lee,Edison T. Liu,Partha P. Majumder,Kiran Kumar Mandapati,Sangkot Marzuki,Wayne Mitchell,Wayne Mitchell,Mitali Mukerji,Kenji Naritomi,Chumpol Ngamphiw,Norio Niikawa,Nao Nishida,Bermseok Oh,Sangho Oh,Jun Ohashi,Akira Oka,Rick Twee-Hee Ong,Carmencita Padilla,Prasit Palittapongarnpim,Henry B. Perdigon,Maude E. Phipps,Maude E. Phipps,Eileen Png,Yoshiyuki Sakaki,Jazelyn M. Salvador,Yuliana Sandraling,Vinod Scaria,Mark Seielstad,Mohd Ros Sidek,Amit Sinha,Metawee Srikummool,Herawati Sudoyo,Sumio Sugano,Helena Suryadi,Yoshiyuki Suzuki,Kristina A. Tabbada,Adrian Tan,Katsushi Tokunaga,Sissades Tongsima,Lilian P. Villamor,Eric Wang,Ying Wang,Haifeng Wang,Jer-Yuarn Wu,Huasheng Xiao,Shuhua Xu,Jin Ok Yang,Yin Yao Shugart,Hyang Sook Yoo,Wentao Yuan,Guoping Zhao,Bin Alwi Zilfalil +94 more
TL;DR: The results suggest that there may have been a single major migration of people into Asia and a subsequent south-to-north migration across the continent, and that genetic ancestry is strongly correlated with linguistic affiliations as well as geography.
Journal ArticleDOI
Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays.
Hajime Matsuzaki,Shoulian Dong,Halina Loi,Xiaojun Di,Guoying Liu,Earl Hubbell,Jane Law,Tam Berntsen,Monica Chadha,Henry Hui,Geoffrey Yang,Giulia C. Kennedy,Teresa Webster,Simon Cawley,P. Sean Walsh,Keith W. Jones,Stephen P. A. Fodor,Rui Mei +17 more
TL;DR: This work presents a genotyping method for simultaneously scoring 116,204 SNPs using oligonucleotide arrays with reproducibility and accuracy at call rates >99, and accuracy as measured by inheritance in trios and concordance with the HapMap Project.
Journal ArticleDOI
Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array.
Hajime Matsuzaki,Halina Loi,Shoulian Dong,Ya Yu Tsai,Joy Fang,Jane Law,Xiaojun Di,Wei-Min Liu,Geoffrey Yang,Guoying Liu,Jing Huang,Giulia C. Kennedy,Thomas B. Ryder,Gregory A. Marcus,P. Sean Walsh,Mark D. Shriver,Jennifer M. Puck,Keith W. Jones,Rui Mei +18 more
TL;DR: A high-throughput genotyping platform that uses a one-primer assay to genotype over 10,000 SNPs per individual on a single oligonucleotide array is presented and a linkage region on chromosome 2p for chronic mucocutaneous candidiasis and thyroid disease is replicated and refined.